Variant report

Variant	rs16893194
Chromosome Location	chr6:82248242-82248243
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1145882	1.00[ASN][1000 genomes]
rs1145883	1.00[ASN][1000 genomes]
rs1145885	1.00[ASN][1000 genomes]
rs1145886	1.00[ASN][1000 genomes]
rs1145888	1.00[ASN][1000 genomes]
rs1276878	1.00[ASN][1000 genomes]
rs1341224	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361548	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592044	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893192	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16893209	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923149	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935003	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153645	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185588	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2211283	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226075	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753423	0.89[EUR][1000 genomes]
rs2753426	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759451	1.00[ASN][1000 genomes]
rs2793331	1.00[ASN][1000 genomes]
rs2793333	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142950	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623287	0.87[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4706143	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4706899	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706900	1.00[ASN][1000 genomes]
rs56048530	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59131186	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6454227	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454228	0.91[EUR][1000 genomes]
rs6454232	1.00[ASN][1000 genomes]
rs6899579	1.00[ASN][1000 genomes]
rs6900544	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725762	0.87[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73749187	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7739492	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755160	1.00[ASN][1000 genomes]
rs9344198	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344200	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344206	1.00[ASN][1000 genomes]
rs9353019	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16893194	SCGB1D2	trans	brain	seeQTL
rs16893194	SCGB2A2	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82244000-82259000	Weak transcription	Placenta	Placenta
2	chr6:82245400-82253000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:82245400-82253000	Weak transcription	Placenta Amnion	Placenta Amnion

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