Variant report

Variant	rs2753426
Chromosome Location	chr6:82260095-82260096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82259716..82262314-chr6:82274555..82277096,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1145882	1.00[ASN][1000 genomes]
rs1145883	1.00[ASN][1000 genomes]
rs1145885	1.00[ASN][1000 genomes]
rs1145886	1.00[ASN][1000 genomes]
rs1145888	1.00[ASN][1000 genomes]
rs1276878	1.00[ASN][1000 genomes]
rs1341224	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361548	1.00[ASN][1000 genomes]
rs1592044	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893192	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16893194	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893209	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923149	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935003	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153645	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185588	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2211283	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226075	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753423	0.84[EUR][1000 genomes]
rs2759451	1.00[ASN][1000 genomes]
rs2793331	1.00[ASN][1000 genomes]
rs2793333	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4142950	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623287	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4706143	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4706899	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706900	1.00[ASN][1000 genomes]
rs56048530	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59131186	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6454227	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454228	0.86[EUR][1000 genomes]
rs6454232	1.00[ASN][1000 genomes]
rs6899579	1.00[ASN][1000 genomes]
rs6900544	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725762	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73749187	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7739492	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755160	1.00[ASN][1000 genomes]
rs9344198	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344200	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344206	1.00[ASN][1000 genomes]
rs9353019	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82253200-82264400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:82253400-82260800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:82256400-82260800	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:82260000-82263000	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links