Variant report

Variant	rs4623287
Chromosome Location	chr6:82227181-82227182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82226459..82229249-chr6:82250530..82252951,2	MCF-7	breast:
2	chr6:82226118..82227919-chr6:82261223..82262942,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269494	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1145882	1.00[ASN][1000 genomes]
rs1145883	1.00[ASN][1000 genomes]
rs1145885	1.00[ASN][1000 genomes]
rs1145886	1.00[ASN][1000 genomes]
rs1145888	1.00[ASN][1000 genomes]
rs1276878	1.00[ASN][1000 genomes]
rs1341224	1.00[ASN][1000 genomes]
rs1361548	1.00[ASN][1000 genomes]
rs1592044	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893192	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16893194	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16893209	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923149	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935003	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153645	0.87[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185588	1.00[ASN][1000 genomes]
rs2211283	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226075	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753426	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2759451	1.00[ASN][1000 genomes]
rs2793331	1.00[ASN][1000 genomes]
rs2793333	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4142950	1.00[ASN][1000 genomes]
rs4706143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706899	1.00[ASN][1000 genomes]
rs4706900	1.00[ASN][1000 genomes]
rs56048530	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59131186	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6454227	1.00[ASN][1000 genomes]
rs6454232	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899579	1.00[ASN][1000 genomes]
rs6900544	0.87[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924906	0.97[EUR][1000 genomes]
rs6928794	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs725762	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73749179	0.97[EUR][1000 genomes]
rs73749187	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7451367	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7739492	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755160	1.00[ASN][1000 genomes]
rs9344198	1.00[ASN][1000 genomes]
rs9344200	1.00[ASN][1000 genomes]
rs9344206	1.00[ASN][1000 genomes]
rs9353019	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links