Variant report

Variant	rs6900544
Chromosome Location	chr6:82262764-82262765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr6:82262205-82263532	SK-N-SH	brain:	n/a	n/a
2	PBX3	chr6:82262278-82263150	SK-N-SH	brain:	n/a	n/a
3	PBX3	chr6:82262208-82263428	SK-N-SH	brain:	n/a	n/a
4	TEAD4	chr6:82262217-82263393	SK-N-SH	brain:	n/a	n/a
5	GATA3	chr6:82262222-82262995	SH-SY5Y	brain:	n/a	chr6:82262657-82262664 chr6:82262654-82262664 chr6:82262771-82262792 chr6:82262492-82262508 chr6:82262776-82262785 chr6:82262650-82262671 chr6:82262657-82262664 chr6:82262773-82262789 chr6:82262657-82262664
6	TCF12	chr6:82262151-82263518	SK-N-SH	brain:	n/a	n/a
7	FOSL2	chr6:82262288-82263472	SK-N-SH	brain:	n/a	chr6:82262676-82262687 chr6:82263312-82263321 chr6:82263070-82263078
8	GATA3	chr6:82262098-82263436	SK-N-SH	brain:	n/a	chr6:82262657-82262664 chr6:82262654-82262664 chr6:82262771-82262792 chr6:82262492-82262508 chr6:82262776-82262785 chr6:82262650-82262671 chr6:82262657-82262664 chr6:82262773-82262789 chr6:82262657-82262664
9	NFIC	chr6:82262321-82262794	SK-N-SH	brain:	n/a	n/a
10	TEAD4	chr6:82262394-82262855	SK-N-SH	brain:	n/a	n/a
11	GATA2	chr6:82262101-82263115	SH-SY5Y	brain:	n/a	chr6:82262657-82262664 chr6:82262654-82262664 chr6:82262771-82262792 chr6:82262492-82262508 chr6:82262776-82262785 chr6:82262650-82262671 chr6:82262657-82262664 chr6:82262773-82262789 chr6:82262657-82262664
12	NFIC	chr6:82262193-82263472	SK-N-SH	brain:	n/a	n/a
13	GATA3	chr6:82262123-82263410	SK-N-SH	brain:	n/a	chr6:82262657-82262664 chr6:82262654-82262664 chr6:82262771-82262792 chr6:82262492-82262508 chr6:82262776-82262785 chr6:82262650-82262671 chr6:82262657-82262664 chr6:82262773-82262789 chr6:82262657-82262664
14	TCF12	chr6:82262215-82263452	SK-N-SH	brain:	n/a	n/a
15	JUND	chr6:82262206-82263489	SK-N-SH	brain:	n/a	chr6:82262676-82262687 chr6:82263165-82263176 chr6:82263312-82263321 chr6:82263070-82263078
16	JUND	chr6:82262293-82263416	SK-N-SH	brain:	n/a	chr6:82262676-82262687 chr6:82263165-82263176 chr6:82263312-82263321 chr6:82263070-82263078

Variant related genes	Relation type
ENSG00000269494	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1145876	1.00[AMR][1000 genomes]
rs1145882	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145883	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145885	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145886	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145888	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1276878	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1341224	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361548	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893192	1.00[EUR][1000 genomes]
rs16893194	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1917064	0.87[AFR][1000 genomes]
rs1923149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935003	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153645	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2211283	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753423	0.92[EUR][1000 genomes]
rs2753426	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759451	1.00[ASN][1000 genomes]
rs2793331	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2793333	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142950	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623287	0.87[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706143	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706899	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706900	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56048530	1.00[EUR][1000 genomes]
rs59131186	1.00[EUR][1000 genomes]
rs6454227	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6454232	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6899579	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs725762	0.87[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73749187	1.00[EUR][1000 genomes]
rs7739492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755160	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9344198	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344206	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9353019	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82253200-82264400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:82260000-82263000	Weak transcription	Placenta	Placenta
3	chr6:82260800-82263000	Enhancers	Colon Smooth Muscle	Colon
4	chr6:82260800-82263400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr6:82260800-82264600	Enhancers	Fetal Lung	lung
6	chr6:82261000-82271000	Weak transcription	Aorta	Aorta
7	chr6:82261800-82263400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:82262000-82263200	Enhancers	Ovary	ovary
9	chr6:82262400-82263400	Enhancers	Rectal Smooth Muscle	rectum
10	chr6:82262600-82263000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:82262600-82263200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:82262600-82263400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:82262600-82263800	Enhancers	Osteobl	bone

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