Variant report

Variant	rs16893209
Chromosome Location	chr6:82253194-82253195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1145882	1.00[ASN][1000 genomes]
rs1145883	1.00[ASN][1000 genomes]
rs1145885	1.00[ASN][1000 genomes]
rs1145886	1.00[ASN][1000 genomes]
rs1145888	1.00[ASN][1000 genomes]
rs1276878	1.00[ASN][1000 genomes]
rs1341224	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361548	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893192	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16893194	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923149	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153645	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185588	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2211283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226075	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753423	0.92[EUR][1000 genomes]
rs2753426	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759451	1.00[ASN][1000 genomes]
rs2793331	1.00[ASN][1000 genomes]
rs2793333	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142950	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623287	0.87[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706143	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706899	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706900	1.00[ASN][1000 genomes]
rs56048530	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59131186	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6454227	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454228	0.94[EUR][1000 genomes]
rs6454232	1.00[ASN][1000 genomes]
rs6899579	1.00[ASN][1000 genomes]
rs6900544	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725762	0.87[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73749187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7739492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755160	1.00[ASN][1000 genomes]
rs9344198	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344200	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344206	1.00[ASN][1000 genomes]
rs9353019	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82244000-82259000	Weak transcription	Placenta	Placenta
2	chr6:82252800-82253600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:82252800-82253800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:82253000-82253200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:82253000-82253400	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links