Variant report

Variant	rs7755160
Chromosome Location	chr6:82323533-82323534
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82316769..82319258-chr6:82322440..82324467,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1145876	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1145882	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1145883	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1145885	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1145886	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1145888	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1276878	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341224	1.00[ASN][1000 genomes]
rs1361548	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1592044	1.00[ASN][1000 genomes]
rs16893194	1.00[ASN][1000 genomes]
rs16893209	1.00[ASN][1000 genomes]
rs1917064	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1923149	1.00[ASN][1000 genomes]
rs1935003	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2153645	0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2185588	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2211283	1.00[ASN][1000 genomes]
rs2226075	1.00[ASN][1000 genomes]
rs2753426	1.00[ASN][1000 genomes]
rs2759451	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793333	1.00[ASN][1000 genomes]
rs4142950	1.00[ASN][1000 genomes]
rs4623287	1.00[ASN][1000 genomes]
rs4706143	1.00[ASN][1000 genomes]
rs4706899	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4706900	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454227	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6454228	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6454232	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899579	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6900544	0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs725762	1.00[ASN][1000 genomes]
rs7739492	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9344198	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9344200	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9344206	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353019	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv517168	chr6:82319174-82325529	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82318000-82356600	Weak transcription	Aorta	Aorta
2	chr6:82320400-82323800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:82322000-82324000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:82322000-82325600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:82322600-82323600	Enhancers	Dnd41	blood
6	chr6:82322800-82324400	Enhancers	Osteobl	bone
7	chr6:82323000-82323600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:82323000-82323800	Enhancers	HUVEC	blood vessel
9	chr6:82323000-82324000	Enhancers	NH-A	brain
10	chr6:82323000-82324400	Enhancers	NHDF-Ad	bronchial
11	chr6:82323000-82324400	Enhancers	NHLF	lung
12	chr6:82323000-82324800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:82323000-82325000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:82323000-82325000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:82323200-82323600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:82323200-82324200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:82323200-82324200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:82323200-82324200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:82323200-82324400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:82323200-82324400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:82323200-82324400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:82323200-82324400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:82323200-82324400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:82323200-82324400	Enhancers	NHEK	skin
25	chr6:82323400-82323600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:82323400-82323800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:82323400-82324200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:82323400-82324200	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:82323400-82324400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:82323400-82324400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:82323400-82324400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:82323400-82324400	Enhancers	Stomach Mucosa	stomach
33	chr6:82323400-82324400	Enhancers	Hela-S3	cervix
34	chr6:82323400-82324600	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr6:82323400-82325000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links