Variant report

Variant	rs1935003
Chromosome Location	chr6:82268684-82268685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1145876	1.00[AMR][1000 genomes]
rs1145882	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145883	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145885	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145886	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145888	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1276878	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1341224	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361548	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893192	1.00[EUR][1000 genomes]
rs16893194	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1917064	0.85[AFR][1000 genomes]
rs1923149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153645	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185588	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2211283	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753423	0.92[EUR][1000 genomes]
rs2753426	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759451	1.00[ASN][1000 genomes]
rs2793331	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2793333	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142950	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623287	0.87[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706143	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706899	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706900	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56048530	1.00[EUR][1000 genomes]
rs59131186	1.00[EUR][1000 genomes]
rs6454227	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454228	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6454232	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6899579	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6900544	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725762	0.87[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73749187	1.00[EUR][1000 genomes]
rs7739492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755160	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9344198	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344200	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344206	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9353019	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82261000-82271000	Weak transcription	Aorta	Aorta
2	chr6:82263400-82270800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:82264600-82270800	Weak transcription	Fetal Lung	lung
4	chr6:82266400-82270400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:82266400-82270600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:82266400-82270800	Weak transcription	Osteobl	bone
7	chr6:82266600-82270800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:82266600-82270800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:82266600-82270800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:82267000-82270600	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:82267400-82271000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:82267600-82271400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:82268000-82274400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:82268200-82270400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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