Variant report

Variant rs28420198
Chromosome Location chr19:53320292-53320293
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53296200-53324000 Weak transcription Fetal Brain Male brain
2 chr19:53306000-53324000 Weak transcription Colon Smooth Muscle Colon
3 chr19:53306600-53324000 Weak transcription Psoas Muscle Psoas
4 chr19:53308200-53324000 Weak transcription Fetal Kidney kidney
5 chr19:53311000-53323600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr19:53311400-53323600 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr19:53311400-53324000 Weak transcription NHDF-Ad bronchial
8 chr19:53313400-53320800 Weak transcription Brain Hippocampus Middle brain
9 chr19:53313600-53324000 Weak transcription Fetal Lung lung
10 chr19:53313600-53324000 Weak transcription Right Ventricle heart
11 chr19:53313600-53324200 Weak transcription Brain Substantia Nigra brain
12 chr19:53313800-53321000 Weak transcription NH-A brain
13 chr19:53313800-53323600 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr19:53313800-53323800 Weak transcription Stomach Mucosa stomach
15 chr19:53313800-53324000 Weak transcription Brain Angular Gyrus brain
16 chr19:53313800-53324000 Weak transcription Brain Cingulate Gyrus brain
17 chr19:53313800-53324000 Weak transcription HSMM muscle
18 chr19:53313800-53324000 Weak transcription NHLF lung
19 chr19:53313800-53324200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr19:53314000-53320400 Weak transcription Brain Anterior Caudate brain
21 chr19:53314000-53320800 Weak transcription H9 Cell Line embryonic stem cell
22 chr19:53314000-53323600 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr19:53314000-53323600 Weak transcription iPS-15b Cell Line embryonic stem cell
24 chr19:53314000-53323600 Weak transcription K562 blood
25 chr19:53314000-53323800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr19:53314000-53323800 Weak transcription Brain Germinal Matrix brain
27 chr19:53314000-53323800 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr19:53314000-53323800 Weak transcription Small Intestine intestine
29 chr19:53314000-53324000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr19:53314000-53324000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr19:53314000-53324000 Weak transcription Fetal Brain Female brain
32 chr19:53314000-53324200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr19:53314000-53324200 Weak transcription Aorta Aorta
34 chr19:53316200-53320800 Strong transcription Duodenum Mucosa Duodenum
35 chr19:53316200-53321200 Strong transcription HUES6 Cell Line embryonic stem cell
36 chr19:53316200-53321200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
37 chr19:53316400-53321200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr19:53316400-53321800 Strong transcription Primary T helper naive cells fromperipheralblood blood
39 chr19:53316400-53321800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr19:53316600-53320400 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
41 chr19:53316600-53320600 Strong transcription Cortex derived primary cultured neurospheres brain
42 chr19:53316600-53320600 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
43 chr19:53316600-53320800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr19:53316600-53320800 Strong transcription Colonic Mucosa Colon
45 chr19:53316600-53321200 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr19:53316600-53321200 ZNF genes & repeats Fetal Intestine Large intestine
47 chr19:53316600-53321600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr19:53316600-53321600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr19:53316600-53321800 Strong transcription Dnd41 blood
50 chr19:53316600-53322000 Strong transcription Fetal Stomach stomach

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