Variant report

Variant	rs28655570
Chromosome Location	chr4:77125512-77125513
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77122932..77125835-chr4:77128901..77130952,2	MCF-7	breast:
2	chr4:77117716..77120024-chr4:77122804..77125775,4	K562	blood:
3	chr4:77115676..77118604-chr4:77122425..77126369,3	MCF-7	breast:
4	chr4:77125230..77126946-chr4:77133828..77136459,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138760	Chromatin interaction
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11934628	1.00[EUR][1000 genomes]
rs11938219	1.00[EUR][1000 genomes]
rs11941285	1.00[EUR][1000 genomes]
rs11944780	1.00[EUR][1000 genomes]
rs17001553	1.00[EUR][1000 genomes]
rs17001556	1.00[EUR][1000 genomes]
rs17001644	1.00[EUR][1000 genomes]
rs17001645	1.00[EUR][1000 genomes]
rs17001647	1.00[EUR][1000 genomes]
rs17001648	1.00[EUR][1000 genomes]
rs17001649	1.00[EUR][1000 genomes]
rs2228380	1.00[EUR][1000 genomes]
rs34078946	1.00[EUR][1000 genomes]
rs34647444	1.00[EUR][1000 genomes]
rs34865218	1.00[EUR][1000 genomes]
rs35211143	1.00[EUR][1000 genomes]
rs35634209	1.00[EUR][1000 genomes]
rs35866970	1.00[EUR][1000 genomes]
rs56891967	1.00[EUR][1000 genomes]
rs58990415	1.00[EUR][1000 genomes]
rs59199771	1.00[EUR][1000 genomes]
rs59815580	1.00[EUR][1000 genomes]
rs59876319	1.00[EUR][1000 genomes]
rs60319873	1.00[EUR][1000 genomes]
rs60541751	1.00[EUR][1000 genomes]
rs60744184	1.00[EUR][1000 genomes]
rs61079077	1.00[EUR][1000 genomes]
rs6832579	1.00[EUR][1000 genomes]
rs7672121	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs999358	1.00[EUR][1000 genomes]
rs999359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799666	chr4:77119942-77129568	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77113200-77134000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:77113600-77134200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:77117000-77134000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:77117200-77129200	Enhancers	Liver	Liver
5	chr4:77117400-77132800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:77119800-77127600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr4:77120000-77130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:77120200-77129400	Enhancers	Brain Substantia Nigra	brain
9	chr4:77120200-77129600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:77120400-77129200	Weak transcription	NHEK	skin
11	chr4:77120400-77129400	Weak transcription	Hela-S3	cervix
12	chr4:77120400-77129800	Weak transcription	Dnd41	blood
13	chr4:77121000-77128200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:77121000-77129600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:77121200-77127400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:77121200-77129400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:77121400-77128800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:77121400-77129200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:77121400-77129200	Weak transcription	NH-A	brain
20	chr4:77121400-77129600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr4:77121400-77129800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:77121400-77132800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:77121400-77133600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:77121400-77134000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr4:77121600-77126000	Enhancers	Colon Smooth Muscle	Colon
26	chr4:77121600-77129600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr4:77121600-77131000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr4:77122000-77127000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:77122000-77127200	Weak transcription	Primary T cells from cord blood	blood
30	chr4:77122000-77127600	Weak transcription	HMEC	breast
31	chr4:77122000-77127800	Weak transcription	Aorta	Aorta
32	chr4:77122000-77129400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr4:77122200-77127000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:77122200-77127200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:77122200-77128800	Weak transcription	HUVEC	blood vessel
36	chr4:77122200-77129000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:77122200-77129600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr4:77122200-77130800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr4:77122400-77126200	Weak transcription	Right Atrium	heart
40	chr4:77122400-77126800	Enhancers	Brain Cingulate Gyrus	brain
41	chr4:77122400-77127400	Weak transcription	Fetal Kidney	kidney
42	chr4:77122400-77128600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:77122400-77129000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr4:77122400-77129000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr4:77122400-77129200	Weak transcription	Colonic Mucosa	Colon
46	chr4:77122400-77129600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr4:77122400-77129600	Weak transcription	Esophagus	oesophagus
48	chr4:77122400-77133600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:77122600-77126800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:77122600-77127000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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