Variant report

Variant	rs59876319
Chromosome Location	chr4:77122210-77122211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77122190..77124913-chr4:77147273..77149332,2	K562	blood:
2	chr4:77118780..77124053-chr4:77134347..77137767,5	MCF-7	breast:
3	chr4:77118894..77122374-chr4:77129647..77132337,3	K562	blood:
4	chr4:77120877..77123601-chr4:77133534..77136298,3	MCF-7	breast:
5	chr4:77114541..77118897-chr4:77119397..77123368,6	K562	blood:
6	chr4:77119760..77123050-chr4:77133589..77135332,3	K562	blood:

Variant related genes	Relation type
ENSG00000138760	Chromatin interaction
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11934628	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938219	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941285	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11944780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001553	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001556	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001644	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001645	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001647	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001648	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001649	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2228380	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655570	1.00[EUR][1000 genomes]
rs34078946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34647444	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34865218	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35211143	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35634209	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35866970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4129291	1.00[AMR][1000 genomes]
rs56891967	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58990415	1.00[EUR][1000 genomes]
rs59199771	1.00[EUR][1000 genomes]
rs59815580	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60319873	1.00[EUR][1000 genomes]
rs60541751	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60744184	1.00[EUR][1000 genomes]
rs61079077	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61313750	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832579	1.00[EUR][1000 genomes]
rs7672121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs999358	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs999359	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799666	chr4:77119942-77129568	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77113200-77134000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:77113600-77134200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:77114200-77122400	Enhancers	Right Ventricle	heart
4	chr4:77114800-77122800	Enhancers	Psoas Muscle	Psoas
5	chr4:77115400-77122600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:77116200-77122400	Enhancers	Pancreas	Pancrea
7	chr4:77116200-77122400	Enhancers	Right Atrium	heart
8	chr4:77116600-77122600	Enhancers	Fetal Thymus	thymus
9	chr4:77117000-77122800	Enhancers	Small Intestine	intestine
10	chr4:77117000-77134000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:77117200-77129200	Enhancers	Liver	Liver
12	chr4:77117400-77122600	Enhancers	Thymus	Thymus
13	chr4:77117400-77132800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:77117800-77122400	Enhancers	Left Ventricle	heart
15	chr4:77117800-77122800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr4:77118000-77122400	Enhancers	Fetal Heart	heart
17	chr4:77118200-77122600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr4:77118600-77122400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr4:77118800-77122400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr4:77118800-77122400	Enhancers	Fetal Stomach	stomach
21	chr4:77118800-77122600	Enhancers	Fetal Muscle Leg	muscle
22	chr4:77118800-77123000	Enhancers	Stomach Mucosa	stomach
23	chr4:77118800-77124200	Enhancers	Fetal Intestine Large	intestine
24	chr4:77118800-77125400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:77119200-77122400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr4:77119400-77122600	Enhancers	Gastric	stomach
27	chr4:77119400-77123200	Enhancers	HepG2	liver
28	chr4:77119800-77122400	Enhancers	Lung	lung
29	chr4:77119800-77122800	Enhancers	Placenta	Placenta
30	chr4:77119800-77123000	Enhancers	Brain Germinal Matrix	brain
31	chr4:77119800-77127600	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr4:77120000-77122600	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr4:77120000-77122600	Enhancers	HSMM	muscle
34	chr4:77120000-77122800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:77120000-77130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:77120200-77122400	Enhancers	Fetal Kidney	kidney
37	chr4:77120200-77122600	Enhancers	Fetal Brain Male	brain
38	chr4:77120200-77123000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr4:77120200-77123000	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr4:77120200-77129400	Enhancers	Brain Substantia Nigra	brain
41	chr4:77120200-77129600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:77120400-77122400	Enhancers	Colonic Mucosa	Colon
43	chr4:77120400-77122400	Enhancers	Rectal Smooth Muscle	rectum
44	chr4:77120400-77123400	Enhancers	Fetal Brain Female	brain
45	chr4:77120400-77124800	Enhancers	Brain Anterior Caudate	brain
46	chr4:77120400-77129200	Weak transcription	NHEK	skin
47	chr4:77120400-77129400	Weak transcription	Hela-S3	cervix
48	chr4:77120400-77129800	Weak transcription	Dnd41	blood
49	chr4:77120800-77122400	Enhancers	Esophagus	oesophagus
50	chr4:77120800-77122400	Enhancers	Ovary	ovary

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