Variant report

Variant	rs999358
Chromosome Location	chr4:77116347-77116348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11934628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11944780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001553	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001556	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001644	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001645	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001647	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001648	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001649	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2228380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655570	1.00[EUR][1000 genomes]
rs34078946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34647444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34865218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35211143	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35634209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35866970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4129291	1.00[AMR][1000 genomes]
rs56891967	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58990415	1.00[EUR][1000 genomes]
rs59199771	1.00[EUR][1000 genomes]
rs59815580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59876319	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60319873	1.00[EUR][1000 genomes]
rs60541751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60744184	1.00[EUR][1000 genomes]
rs61079077	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61313750	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832579	1.00[EUR][1000 genomes]
rs7672121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs999359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77097600-77119600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr4:77109800-77117400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:77110200-77117000	Strong transcription	Primary T cells from cord blood	blood
4	chr4:77110600-77116600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:77111000-77118000	Strong transcription	Duodenum Mucosa	Duodenum
6	chr4:77112400-77117000	Genic enhancers	Brain Substantia Nigra	brain
7	chr4:77112600-77117000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr4:77113000-77117000	Strong transcription	Rectal Smooth Muscle	rectum
9	chr4:77113000-77117200	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr4:77113000-77117400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:77113200-77117000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr4:77113200-77134000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:77113400-77116800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:77113400-77117200	Strong transcription	Stomach Smooth Muscle	stomach
15	chr4:77113600-77117000	Genic enhancers	Monocytes-CD14+_RO01746	blood
16	chr4:77113600-77118800	Strong transcription	Dnd41	blood
17	chr4:77113600-77134200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:77113800-77116600	Strong transcription	Primary B cells from peripheral blood	blood
19	chr4:77113800-77116800	Genic enhancers	Brain Anterior Caudate	brain
20	chr4:77113800-77117000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:77113800-77118200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:77113800-77119400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr4:77114000-77116800	Genic enhancers	Brain Hippocampus Middle	brain
24	chr4:77114000-77116800	Enhancers	Small Intestine	intestine
25	chr4:77114000-77117000	Strong transcription	HUVEC	blood vessel
26	chr4:77114000-77117400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
27	chr4:77114000-77118800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:77114200-77116600	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr4:77114200-77117000	Genic enhancers	Brain Inferior Temporal Lobe	brain
30	chr4:77114200-77117000	Strong transcription	Fetal Lung	lung
31	chr4:77114200-77118400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
32	chr4:77114200-77122400	Enhancers	Right Ventricle	heart
33	chr4:77114400-77116600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:77114400-77116600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:77114400-77116800	Strong transcription	Primary B cells from cord blood	blood
36	chr4:77114400-77116800	Strong transcription	Primary hematopoietic stem cells	blood
37	chr4:77114400-77116800	Strong transcription	Brain Germinal Matrix	brain
38	chr4:77114400-77116800	Strong transcription	Fetal Kidney	kidney
39	chr4:77114400-77117000	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr4:77114400-77117000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr4:77114400-77117000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr4:77114400-77117000	Genic enhancers	Placenta	Placenta
43	chr4:77114400-77118200	Enhancers	Stomach Mucosa	stomach
44	chr4:77114400-77118800	Genic enhancers	Fetal Intestine Small	intestine
45	chr4:77114600-77116400	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr4:77114600-77116400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr4:77114600-77116600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:77114600-77117000	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr4:77114600-77117200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr4:77114600-77117200	Strong transcription	Fetal Muscle Trunk	muscle

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