Variant report

Variant	rs59199771
Chromosome Location	chr4:77194046-77194047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77187933..77189509-chr4:77191905..77194383,2	K562	blood:
2	chr4:77194005..77196231-chr4:77197210..77198929,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11934628	1.00[EUR][1000 genomes]
rs11938219	1.00[EUR][1000 genomes]
rs11941285	1.00[EUR][1000 genomes]
rs11944780	1.00[EUR][1000 genomes]
rs17001553	1.00[EUR][1000 genomes]
rs17001556	1.00[EUR][1000 genomes]
rs17001644	1.00[EUR][1000 genomes]
rs17001645	1.00[EUR][1000 genomes]
rs17001647	1.00[EUR][1000 genomes]
rs17001648	1.00[EUR][1000 genomes]
rs17001649	1.00[EUR][1000 genomes]
rs2228380	1.00[EUR][1000 genomes]
rs28655570	1.00[EUR][1000 genomes]
rs34078946	1.00[EUR][1000 genomes]
rs34647444	1.00[EUR][1000 genomes]
rs34865218	1.00[EUR][1000 genomes]
rs35211143	1.00[EUR][1000 genomes]
rs35634209	1.00[EUR][1000 genomes]
rs35866970	1.00[EUR][1000 genomes]
rs56891967	1.00[EUR][1000 genomes]
rs58990415	1.00[EUR][1000 genomes]
rs59815580	1.00[EUR][1000 genomes]
rs59876319	1.00[EUR][1000 genomes]
rs60319873	1.00[EUR][1000 genomes]
rs60541751	1.00[EUR][1000 genomes]
rs60744184	1.00[EUR][1000 genomes]
rs61079077	1.00[EUR][1000 genomes]
rs6832579	1.00[EUR][1000 genomes]
rs7672121	1.00[EUR][1000 genomes]
rs999358	1.00[EUR][1000 genomes]
rs999359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461559	chr4:77192838-77204500	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594695	chr4:77192838-77204500	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77173600-77202000	Weak transcription	Psoas Muscle	Psoas
2	chr4:77173800-77196000	Weak transcription	Adipose Nuclei	Adipose
3	chr4:77173800-77215800	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:77177800-77199200	Weak transcription	Placenta	Placenta
5	chr4:77178800-77201200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:77180000-77202000	Weak transcription	Gastric	stomach
7	chr4:77182000-77194600	Weak transcription	Stomach Mucosa	stomach
8	chr4:77186400-77204200	Weak transcription	Aorta	Aorta
9	chr4:77186600-77196200	Weak transcription	Fetal Intestine Large	intestine
10	chr4:77186600-77196800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr4:77186600-77215000	Weak transcription	Brain Anterior Caudate	brain
12	chr4:77187000-77196000	Weak transcription	Fetal Intestine Small	intestine
13	chr4:77187600-77202000	Weak transcription	Brain Substantia Nigra	brain
14	chr4:77188000-77202200	Weak transcription	Brain Angular Gyrus	brain
15	chr4:77188200-77202000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:77190400-77199200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:77191800-77199400	Enhancers	Liver	Liver
18	chr4:77192000-77194400	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr4:77192000-77194600	Enhancers	HepG2	liver
20	chr4:77192600-77212200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:77192800-77197200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:77193000-77201800	Weak transcription	Left Ventricle	heart
23	chr4:77193000-77202000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:77193000-77202200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr4:77193400-77194200	Strong transcription	Brain Inferior Temporal Lobe	brain
26	chr4:77194000-77204200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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