Variant report

Variant	rs34647444
Chromosome Location	chr4:77118783-77118784
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr4:77118690-77120437	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77117574..77120210-chr4:77127527..77130330,2	K562	blood:
2	chr4:77118780..77124053-chr4:77134347..77137767,5	MCF-7	breast:
3	chr4:77118195..77119871-chr4:77133173..77136146,2	MCF-7	breast:
4	chr4:77118497..77121388-chr4:77227077..77230082,4	MCF-7	breast:
5	chr4:77117716..77120024-chr4:77122804..77125775,4	K562	blood:

No data

Variant related genes	Relation type
SCARB2	TF binding region
ENSG00000118804	Chromatin interaction
ENSG00000189157	Chromatin interaction
ENSG00000138760	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11934628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11944780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001553	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001556	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001644	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001645	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001647	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001648	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001649	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2228380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655570	1.00[EUR][1000 genomes]
rs34078946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34865218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35211143	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35634209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35866970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4129291	1.00[AMR][1000 genomes]
rs56891967	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58990415	1.00[EUR][1000 genomes]
rs59199771	1.00[EUR][1000 genomes]
rs59815580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59876319	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60319873	1.00[EUR][1000 genomes]
rs60541751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60744184	1.00[EUR][1000 genomes]
rs61079077	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61313750	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832579	1.00[EUR][1000 genomes]
rs7672121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs999358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs999359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77097600-77119600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr4:77113200-77134000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:77113600-77118800	Strong transcription	Dnd41	blood
4	chr4:77113600-77134200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:77113800-77119400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:77114000-77118800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:77114200-77122400	Enhancers	Right Ventricle	heart
8	chr4:77114400-77118800	Genic enhancers	Fetal Intestine Small	intestine
9	chr4:77114600-77119400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:77114600-77121000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:77114600-77122000	Enhancers	HMEC	breast
12	chr4:77114800-77122800	Enhancers	Psoas Muscle	Psoas
13	chr4:77115000-77118800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:77115000-77118800	Genic enhancers	HSMM	muscle
15	chr4:77115200-77118800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:77115200-77119400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:77115200-77122200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:77115400-77119400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr4:77115400-77119400	Enhancers	NHLF	lung
20	chr4:77115400-77122600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:77115600-77119200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr4:77115600-77119200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:77115600-77119400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr4:77115600-77120800	Enhancers	Adipose Nuclei	Adipose
25	chr4:77115800-77119200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:77116000-77119200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr4:77116200-77118800	Genic enhancers	Rectal Mucosa Donor 29	rectum
28	chr4:77116200-77119000	Weak transcription	K562	blood
29	chr4:77116200-77119600	Enhancers	Brain Angular Gyrus	brain
30	chr4:77116200-77122400	Enhancers	Pancreas	Pancrea
31	chr4:77116200-77122400	Enhancers	Right Atrium	heart
32	chr4:77116400-77119200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:77116400-77119400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:77116600-77119200	Weak transcription	A549	lung
35	chr4:77116600-77122600	Enhancers	Fetal Thymus	thymus
36	chr4:77116800-77118800	Genic enhancers	Fetal Intestine Large	intestine
37	chr4:77116800-77118800	Enhancers	Ovary	ovary
38	chr4:77116800-77119000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr4:77116800-77119200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:77116800-77119200	Weak transcription	Hela-S3	cervix
41	chr4:77116800-77119200	Enhancers	Osteobl	bone
42	chr4:77116800-77119400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:77116800-77119400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:77116800-77122200	Enhancers	Primary B cells from peripheral blood	blood
45	chr4:77117000-77118800	Enhancers	Lung	lung
46	chr4:77117000-77118800	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr4:77117000-77119000	Enhancers	Fetal Brain Male	brain
48	chr4:77117000-77119200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr4:77117000-77119200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr4:77117000-77119200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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