Variant report

Variant	rs35866970
Chromosome Location	chr4:77067335-77067336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77065569..77067596-chr4:77067716..77071190,4	MCF-7	breast:
2	chr4:77050141..77053778-chr4:77066166..77070004,4	MCF-7	breast:
3	chr4:77066331..77070645-chr4:77133023..77136401,5	K562	blood:
4	chr4:77065717..77067394-chr4:77069102..77070883,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189157	Chromatin interaction
ENSG00000138760	Chromatin interaction
ENSG00000138750	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11934628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11944780	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17001649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2228380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28655570	1.00[EUR][1000 genomes]
rs34078946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34647444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34865218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35211143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35634209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4129291	1.00[AMR][1000 genomes]
rs56891967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58990415	1.00[EUR][1000 genomes]
rs59199771	1.00[EUR][1000 genomes]
rs59815580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59876319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60319873	1.00[EUR][1000 genomes]
rs60541751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60744184	1.00[EUR][1000 genomes]
rs61079077	1.00[EUR][1000 genomes]
rs61313750	1.00[AMR][1000 genomes]
rs6832579	1.00[EUR][1000 genomes]
rs73825589	1.00[AMR][1000 genomes]
rs7672121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs999358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs999359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv470047	chr4:77033590-77096777	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv594693	chr4:77033590-77101068	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv461558	chr4:77033725-77115553	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv594694	chr4:77033725-77115553	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1008318	chr4:77042356-77095658	Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv537144	chr4:77042356-77095658	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv1000539	chr4:77042356-77105492	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv1000178	chr4:77053046-77113080	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77028000-77068600	Weak transcription	Gastric	stomach
2	chr4:77032600-77067600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:77033200-77068400	Weak transcription	Small Intestine	intestine
4	chr4:77035000-77068400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:77035200-77068600	Weak transcription	Pancreas	Pancrea
6	chr4:77035600-77068400	Weak transcription	Right Ventricle	heart
7	chr4:77039000-77068200	Weak transcription	Psoas Muscle	Psoas
8	chr4:77039000-77068600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:77044200-77068200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:77045000-77068600	Weak transcription	Spleen	Spleen
11	chr4:77050200-77068000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:77051400-77068600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:77057000-77068200	Weak transcription	Colonic Mucosa	Colon
14	chr4:77057400-77067400	Weak transcription	Fetal Brain Male	brain
15	chr4:77058800-77068400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:77062400-77067600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:77062400-77067800	Weak transcription	Fetal Stomach	stomach
18	chr4:77062400-77068600	Weak transcription	Aorta	Aorta
19	chr4:77062400-77068600	Weak transcription	Esophagus	oesophagus
20	chr4:77062400-77068600	Weak transcription	Lung	lung
21	chr4:77062600-77067600	Weak transcription	NHLF	lung
22	chr4:77062600-77068400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:77062600-77068600	Weak transcription	Left Ventricle	heart
24	chr4:77062800-77067400	Weak transcription	Brain Angular Gyrus	brain
25	chr4:77062800-77067600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:77062800-77068000	Weak transcription	Brain Hippocampus Middle	brain
27	chr4:77062800-77068200	Weak transcription	Ovary	ovary
28	chr4:77063000-77067400	Weak transcription	A549	lung
29	chr4:77063200-77067600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr4:77063200-77067800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:77063200-77068000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr4:77063200-77068200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:77063400-77067600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr4:77063400-77068200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr4:77063400-77068200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:77063800-77067400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr4:77063800-77067600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr4:77063800-77067800	Weak transcription	Fetal Heart	heart
39	chr4:77064000-77067600	Weak transcription	Brain Substantia Nigra	brain
40	chr4:77065000-77067400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:77065000-77067800	Weak transcription	Fetal Intestine Small	intestine
42	chr4:77065200-77067600	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr4:77065200-77068600	Weak transcription	Placenta	Placenta
44	chr4:77065400-77067600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr4:77065400-77067600	Weak transcription	Brain Anterior Caudate	brain
46	chr4:77065400-77067600	Weak transcription	Fetal Intestine Large	intestine
47	chr4:77065400-77067600	Weak transcription	HSMM	muscle
48	chr4:77065400-77068400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr4:77065600-77067400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr4:77065600-77067600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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