Variant report

Variant	rs60319873
Chromosome Location	chr4:77182830-77182831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:77182781-77183030	HepG2	liver:	n/a	chr4:77182920-77182931

Variant related genes	Relation type
ENSG00000272414	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11934628	1.00[EUR][1000 genomes]
rs11938219	1.00[EUR][1000 genomes]
rs11941285	1.00[EUR][1000 genomes]
rs11944780	1.00[EUR][1000 genomes]
rs17001553	1.00[EUR][1000 genomes]
rs17001556	1.00[EUR][1000 genomes]
rs17001644	1.00[EUR][1000 genomes]
rs17001645	1.00[EUR][1000 genomes]
rs17001647	1.00[EUR][1000 genomes]
rs17001648	1.00[EUR][1000 genomes]
rs17001649	1.00[EUR][1000 genomes]
rs2228380	1.00[EUR][1000 genomes]
rs28655570	1.00[EUR][1000 genomes]
rs34078946	1.00[EUR][1000 genomes]
rs34647444	1.00[EUR][1000 genomes]
rs34865218	1.00[EUR][1000 genomes]
rs35211143	1.00[EUR][1000 genomes]
rs35634209	1.00[EUR][1000 genomes]
rs35866970	1.00[EUR][1000 genomes]
rs56891967	1.00[EUR][1000 genomes]
rs58990415	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59199771	1.00[EUR][1000 genomes]
rs59815580	1.00[EUR][1000 genomes]
rs59876319	1.00[EUR][1000 genomes]
rs60541751	1.00[EUR][1000 genomes]
rs60744184	1.00[EUR][1000 genomes]
rs61079077	1.00[EUR][1000 genomes]
rs6832579	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7672121	1.00[EUR][1000 genomes]
rs999358	1.00[EUR][1000 genomes]
rs999359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760851	chr4:77164549-77185144	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77173600-77202000	Weak transcription	Psoas Muscle	Psoas
2	chr4:77173800-77185200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:77173800-77185400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:77173800-77185400	Weak transcription	Brain Anterior Caudate	brain
5	chr4:77173800-77186000	Weak transcription	Pancreas	Pancrea
6	chr4:77173800-77191400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:77173800-77196000	Weak transcription	Adipose Nuclei	Adipose
8	chr4:77173800-77215800	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:77174000-77185600	Weak transcription	Brain Angular Gyrus	brain
10	chr4:77174200-77186000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:77176200-77186400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:77177800-77185400	Weak transcription	Aorta	Aorta
13	chr4:77177800-77199200	Weak transcription	Placenta	Placenta
14	chr4:77178800-77185200	Weak transcription	Fetal Intestine Large	intestine
15	chr4:77178800-77201200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:77179000-77186800	Weak transcription	Brain Substantia Nigra	brain
17	chr4:77179400-77185000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:77179400-77185400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:77180000-77202000	Weak transcription	Gastric	stomach
20	chr4:77180200-77185400	Weak transcription	Fetal Intestine Small	intestine
21	chr4:77182000-77194600	Weak transcription	Stomach Mucosa	stomach
22	chr4:77182400-77193400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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