Variant report

Variant	rs58990415
Chromosome Location	chr4:77175119-77175120
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77165064..77167493-chr4:77174521..77177235,2	K562	blood:
2	chr4:77171208..77175531-chr4:77176138..77180024,6	K562	blood:

Variant related genes	Relation type
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11934628	1.00[EUR][1000 genomes]
rs11938219	1.00[EUR][1000 genomes]
rs11941285	1.00[EUR][1000 genomes]
rs11944780	1.00[EUR][1000 genomes]
rs17001553	1.00[EUR][1000 genomes]
rs17001556	1.00[EUR][1000 genomes]
rs17001644	1.00[EUR][1000 genomes]
rs17001645	1.00[EUR][1000 genomes]
rs17001647	1.00[EUR][1000 genomes]
rs17001648	1.00[EUR][1000 genomes]
rs17001649	1.00[EUR][1000 genomes]
rs2228380	1.00[EUR][1000 genomes]
rs28655570	1.00[EUR][1000 genomes]
rs34078946	1.00[EUR][1000 genomes]
rs34647444	1.00[EUR][1000 genomes]
rs34865218	1.00[EUR][1000 genomes]
rs35211143	1.00[EUR][1000 genomes]
rs35634209	1.00[EUR][1000 genomes]
rs35866970	1.00[EUR][1000 genomes]
rs56891967	1.00[EUR][1000 genomes]
rs59199771	1.00[EUR][1000 genomes]
rs59815580	1.00[EUR][1000 genomes]
rs59876319	1.00[EUR][1000 genomes]
rs60319873	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60541751	1.00[EUR][1000 genomes]
rs60744184	1.00[EUR][1000 genomes]
rs61079077	1.00[EUR][1000 genomes]
rs6832579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7672121	1.00[EUR][1000 genomes]
rs999358	1.00[EUR][1000 genomes]
rs999359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760851	chr4:77164549-77185144	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv516357	chr4:77167242-77178379	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2421530	chr4:77167242-77178676	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77173400-77176600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:77173400-77176600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:77173400-77177200	Weak transcription	Aorta	Aorta
4	chr4:77173400-77177400	Weak transcription	Spleen	Spleen
5	chr4:77173400-77177800	Weak transcription	HepG2	liver
6	chr4:77173600-77176600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:77173600-77176600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:77173600-77178000	Weak transcription	Liver	Liver
9	chr4:77173600-77178000	Weak transcription	Fetal Intestine Small	intestine
10	chr4:77173600-77202000	Weak transcription	Psoas Muscle	Psoas
11	chr4:77173800-77185200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:77173800-77185400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:77173800-77185400	Weak transcription	Brain Anterior Caudate	brain
14	chr4:77173800-77186000	Weak transcription	Pancreas	Pancrea
15	chr4:77173800-77191400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:77173800-77196000	Weak transcription	Adipose Nuclei	Adipose
17	chr4:77173800-77215800	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:77174000-77177600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:77174000-77185600	Weak transcription	Brain Angular Gyrus	brain
20	chr4:77174200-77178400	Weak transcription	Brain Substantia Nigra	brain
21	chr4:77174200-77186000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:77174400-77178400	Weak transcription	Brain Inferior Temporal Lobe	brain

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