Variant report

Variant	rs2936018
Chromosome Location	chr1:214561352-214561353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10735513	0.94[AMR][1000 genomes]
rs11120308	0.86[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11120309	0.86[CEU][hapmap];0.91[CHB][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1135352	0.92[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11587662	0.80[AMR][1000 genomes]
rs1472439	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1472443	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2291829	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2936014	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2936015	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2936016	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2936017	0.92[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3002297	0.81[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3002298	0.93[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3002299	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002300	0.92[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002301	0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002303	0.92[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002305	0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002306	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3002307	0.92[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002308	0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002309	0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002312	0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3013442	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3013446	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3013448	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3013451	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3013452	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3013455	0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4129186	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4311855	0.86[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4578186	0.86[CHB][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4655248	0.97[ASN][1000 genomes]
rs4655342	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6657368	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6670349	0.88[AMR][1000 genomes]
rs7413877	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7513473	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7513565	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7524206	0.86[CHB][hapmap]
rs7530350	0.86[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7550799	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:214524400-214574400	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:214529000-214584200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:214529400-214561800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:214537600-214577000	Weak transcription	Stomach Mucosa	stomach
6	chr1:214539600-214561600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:214541600-214566600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:214543600-214561600	Weak transcription	Colonic Mucosa	Colon
9	chr1:214546200-214576000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:214546200-214576200	Weak transcription	Right Atrium	heart
11	chr1:214547800-214576200	Weak transcription	Fetal Heart	heart
12	chr1:214549400-214561400	Strong transcription	Fetal Stomach	stomach
13	chr1:214553200-214562400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:214554000-214562200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:214554000-214568200	Weak transcription	Liver	Liver
16	chr1:214554000-214577800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:214554200-214577800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr1:214554600-214561600	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:214554800-214561400	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:214555000-214562400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:214555600-214561600	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr1:214556000-214576000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:214556200-214561400	Strong transcription	Adipose Nuclei	Adipose
24	chr1:214556200-214561400	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr1:214556800-214573400	Weak transcription	Fetal Kidney	kidney
26	chr1:214557600-214568600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:214557800-214563600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr1:214557800-214566600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr1:214557800-214576200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:214557800-214578000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:214557800-214589000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr1:214558000-214562200	Weak transcription	Colon Smooth Muscle	Colon
33	chr1:214558000-214564000	Weak transcription	Esophagus	oesophagus
34	chr1:214558000-214564000	Weak transcription	Ovary	ovary
35	chr1:214558000-214565400	Weak transcription	Aorta	Aorta
36	chr1:214558000-214565800	Weak transcription	A549	lung
37	chr1:214558000-214566000	Weak transcription	Lung	lung
38	chr1:214558000-214566000	Weak transcription	Spleen	Spleen
39	chr1:214558000-214566200	Weak transcription	HepG2	liver
40	chr1:214558000-214567200	Weak transcription	Fetal Lung	lung
41	chr1:214558000-214576600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr1:214558000-214578200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr1:214558200-214566400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr1:214558200-214570600	Weak transcription	Dnd41	blood
45	chr1:214558200-214584000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr1:214558400-214563800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr1:214558400-214563800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr1:214558400-214564000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr1:214558400-214565200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr1:214558400-214565800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links