Variant report

Variant	rs3013446
Chromosome Location	chr1:214558228-214558229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10735513	0.95[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11120308	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11120309	0.86[CEU][hapmap];0.86[CHB][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1135352	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11587662	0.82[AMR][1000 genomes]
rs1472439	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1472443	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2291829	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2936014	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2936015	0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2936016	0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2936017	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2936018	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3002297	0.86[CHB][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3002298	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3002299	0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002300	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002301	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002303	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002305	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3002306	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3002307	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3002308	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3002309	0.93[CEU][hapmap];0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3002312	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3013442	1.00[ASW][hapmap];0.93[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3013448	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3013451	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3013452	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3013455	0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4129186	0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4311855	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4578186	1.00[ASW][hapmap];0.80[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4655248	0.95[ASN][1000 genomes]
rs4655342	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6657368	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6670349	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7413877	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7513473	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7513565	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7530350	0.86[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7550799	1.00[ASW][hapmap];0.93[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:214524400-214574400	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:214529000-214584200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:214529400-214561800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:214537600-214577000	Weak transcription	Stomach Mucosa	stomach
6	chr1:214538000-214559400	Weak transcription	Small Intestine	intestine
7	chr1:214539600-214561600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:214541600-214566600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:214543600-214561600	Weak transcription	Colonic Mucosa	Colon
10	chr1:214545000-214559400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:214546200-214576000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:214546200-214576200	Weak transcription	Right Atrium	heart
13	chr1:214547800-214576200	Weak transcription	Fetal Heart	heart
14	chr1:214549000-214560800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:214549400-214561400	Strong transcription	Fetal Stomach	stomach
16	chr1:214550800-214560400	Strong transcription	Fetal Muscle Trunk	muscle
17	chr1:214551000-214558800	Strong transcription	Fetal Muscle Leg	muscle
18	chr1:214551400-214558400	Strong transcription	Fetal Intestine Large	intestine
19	chr1:214552000-214559800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:214552200-214559800	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr1:214552600-214558400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:214553000-214558600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:214553200-214558400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:214553200-214559800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:214553200-214562400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:214553400-214559600	Strong transcription	HSMM	muscle
27	chr1:214553800-214559800	Strong transcription	NH-A	brain
28	chr1:214554000-214558400	Strong transcription	HSMMtube	muscle
29	chr1:214554000-214562200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:214554000-214568200	Weak transcription	Liver	Liver
31	chr1:214554000-214577800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:214554200-214577800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr1:214554600-214558600	Strong transcription	Stomach Smooth Muscle	stomach
34	chr1:214554600-214559800	Strong transcription	Osteobl	bone
35	chr1:214554600-214561200	Strong transcription	Placenta	Placenta
36	chr1:214554600-214561600	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr1:214554800-214558600	Strong transcription	Fetal Intestine Small	intestine
38	chr1:214554800-214559800	Strong transcription	HMEC	breast
39	chr1:214554800-214561400	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr1:214555000-214558800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:214555000-214562400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr1:214555200-214559800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:214555200-214559800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr1:214555200-214559800	Strong transcription	NHEK	skin
45	chr1:214555200-214561000	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr1:214555400-214558400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr1:214555400-214559600	Strong transcription	NHDF-Ad	bronchial
48	chr1:214555400-214559800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr1:214555600-214558400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr1:214555600-214561600	Strong transcription	HUES6 Cell Line	embryonic stem cell

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