The 2.0 version of rSNPBase

Variant report

Variant rs1472439
Chromosome Location chr1:214525603-214525604
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214486200-214526000 Weak transcription Psoas Muscle Psoas
2 chr1:214493000-214534600 Weak transcription Brain Inferior Temporal Lobe brain
3 chr1:214503200-214537800 Weak transcription Gastric stomach
4 chr1:214504600-214533200 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:214507000-214529800 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr1:214508400-214529600 Weak transcription Pancreas Pancrea
7 chr1:214508400-214535000 Weak transcription Esophagus oesophagus
8 chr1:214508800-214528600 Weak transcription Fetal Intestine Large intestine
9 chr1:214511400-214529400 Weak transcription Aorta Aorta
10 chr1:214511400-214530400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr1:214511400-214531200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr1:214511600-214528000 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr1:214511800-214528000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr1:214512000-214537000 Weak transcription Rectal Smooth Muscle rectum
15 chr1:214513600-214552200 Weak transcription ES-WA7 Cell Line embryonic stem cell
16 chr1:214514000-214537800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:214514800-214526400 Weak transcription Fetal Stomach stomach
18 chr1:214515400-214542600 Weak transcription Brain Substantia Nigra brain
19 chr1:214518400-214537800 Weak transcription Fetal Brain Male brain
20 chr1:214518600-214529000 Weak transcription Ovary ovary
21 chr1:214518800-214528800 Weak transcription Fetal Kidney kidney
22 chr1:214519000-214528600 Weak transcription Fetal Lung lung
23 chr1:214519000-214533800 Weak transcription Duodenum Mucosa Duodenum
24 chr1:214519000-214557800 Weak transcription Dnd41 blood
25 chr1:214519200-214526400 Weak transcription Fetal Muscle Trunk muscle
26 chr1:214519200-214577200 Weak transcription Primary hematopoietic stem cells blood
27 chr1:214520400-214526800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:214520400-214526800 Weak transcription Fetal Muscle Leg muscle
29 chr1:214520400-214529400 Weak transcription Fetal Intestine Small intestine
30 chr1:214521200-214537600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:214521600-214531000 Weak transcription Hela-S3 cervix
32 chr1:214521800-214528800 Weak transcription Placenta Placenta
33 chr1:214522000-214526800 Weak transcription NHLF lung
34 chr1:214522800-214526800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr1:214522800-214552800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr1:214523400-214526400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:214523400-214526800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:214523400-214530000 Weak transcription Colon Smooth Muscle Colon
39 chr1:214523400-214540800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
40 chr1:214523600-214526800 Enhancers HSMMtube muscle
41 chr1:214523600-214528200 Weak transcription iPS-15b Cell Line embryonic stem cell
42 chr1:214523600-214529000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr1:214523800-214525800 Weak transcription HMEC breast
44 chr1:214523800-214525800 Strong transcription Osteobl bone
45 chr1:214523800-214526800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr1:214523800-214526800 Weak transcription A549 lung
47 chr1:214523800-214527800 Weak transcription H9 Cell Line embryonic stem cell
48 chr1:214523800-214527800 Weak transcription HUES48 Cell Line embryonic stem cell
49 chr1:214523800-214527800 Weak transcription iPS-18 Cell Line embryonic stem cell
50 chr1:214523800-214528000 Weak transcription iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015