Variant report

Variant	rs6657368
Chromosome Location	chr1:214567378-214567379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214565902..214568526-chr1:214570945..214572698,2	MCF-7	breast:
2	chr1:214562380..214564096-chr1:214566780..214568613,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10735513	0.83[AMR][1000 genomes]
rs11120308	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11120309	0.86[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1135352	0.93[CEU][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes]
rs1472439	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1472443	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2291829	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2936014	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2936015	0.84[AMR][1000 genomes]
rs2936016	0.84[AMR][1000 genomes]
rs2936017	0.93[CEU][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes]
rs2936018	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3002297	0.82[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes]
rs3002298	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3002299	0.84[AMR][1000 genomes]
rs3002300	0.93[CEU][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs3002301	0.85[AMR][1000 genomes]
rs3002303	0.93[CEU][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes]
rs3002305	0.85[AMR][1000 genomes]
rs3002306	0.87[AMR][1000 genomes]
rs3002307	0.93[CEU][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes]
rs3002308	0.85[AMR][1000 genomes]
rs3002309	0.93[CEU][hapmap];0.85[AMR][1000 genomes]
rs3002312	0.85[AMR][1000 genomes]
rs3013442	1.00[ASW][hapmap];0.93[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3013446	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3013448	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3013451	1.00[CEU][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3013452	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3013455	0.87[AMR][1000 genomes]
rs4129186	0.86[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4311855	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4578186	1.00[ASW][hapmap];0.81[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4655248	0.91[ASN][1000 genomes]
rs4655342	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7413877	0.83[AMR][1000 genomes]
rs7513473	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7513565	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7524206	0.80[CHB][hapmap]
rs7530350	0.86[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7550799	1.00[ASW][hapmap];0.93[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:214524400-214574400	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:214529000-214584200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:214537600-214577000	Weak transcription	Stomach Mucosa	stomach
5	chr1:214546200-214576000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:214546200-214576200	Weak transcription	Right Atrium	heart
7	chr1:214547800-214576200	Weak transcription	Fetal Heart	heart
8	chr1:214554000-214568200	Weak transcription	Liver	Liver
9	chr1:214554000-214577800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:214554200-214577800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:214556000-214576000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:214556800-214573400	Weak transcription	Fetal Kidney	kidney
13	chr1:214557600-214568600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:214557800-214576200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:214557800-214578000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:214557800-214589000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr1:214558000-214576600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr1:214558000-214578200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:214558200-214570600	Weak transcription	Dnd41	blood
20	chr1:214558200-214584000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:214558600-214569000	Weak transcription	Psoas Muscle	Psoas
22	chr1:214560000-214592000	Weak transcription	Hela-S3	cervix
23	chr1:214560400-214576600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:214560600-214576000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:214560800-214568200	Strong transcription	HSMM	muscle
26	chr1:214560800-214576000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:214562400-214568200	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr1:214562400-214568200	Strong transcription	HMEC	breast
29	chr1:214562800-214568200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:214563000-214575600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:214563200-214567600	Strong transcription	Adipose Nuclei	Adipose
32	chr1:214563200-214568000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:214563200-214568200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:214563600-214567400	Strong transcription	Stomach Smooth Muscle	stomach
35	chr1:214563600-214569200	Strong transcription	NHEK	skin
36	chr1:214563600-214575200	Strong transcription	HUVEC	blood vessel
37	chr1:214563800-214567400	Strong transcription	HSMMtube	muscle
38	chr1:214563800-214567400	Strong transcription	Osteobl	bone
39	chr1:214563800-214569600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr1:214563800-214570800	Strong transcription	Fetal Intestine Large	intestine
41	chr1:214563800-214575400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr1:214563800-214575400	Strong transcription	Fetal Muscle Trunk	muscle
43	chr1:214564000-214568400	Strong transcription	Fetal Stomach	stomach
44	chr1:214564000-214568400	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr1:214564200-214570600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr1:214564400-214567400	Strong transcription	NHDF-Ad	bronchial
47	chr1:214564400-214569000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr1:214564600-214569600	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr1:214565200-214567400	Strong transcription	Right Ventricle	heart
50	chr1:214565200-214567600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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