The 2.0 version of rSNPBase

Variant report

Variant rs3002299
Chromosome Location chr1:214538286-214538287
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214513600-214552200 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:214515400-214542600 Weak transcription Brain Substantia Nigra brain
3 chr1:214519000-214557800 Weak transcription Dnd41 blood
4 chr1:214519200-214577200 Weak transcription Primary hematopoietic stem cells blood
5 chr1:214522800-214552800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:214523400-214540800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr1:214524400-214574400 Weak transcription Brain Hippocampus Middle brain
8 chr1:214524800-214539200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:214525600-214540000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr1:214526000-214538600 Strong transcription Stomach Smooth Muscle stomach
11 chr1:214526000-214544600 Weak transcription Spleen Spleen
12 chr1:214526400-214542400 Strong transcription Fetal Adrenal Gland Adrenal Gland
13 chr1:214527400-214540600 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr1:214527800-214542400 Weak transcription HepG2 liver
15 chr1:214528600-214539800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr1:214528600-214552800 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr1:214528600-214555800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr1:214528800-214538800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr1:214528800-214539200 Strong transcription HUES6 Cell Line embryonic stem cell
20 chr1:214528800-214551800 Strong transcription HUES64 Cell Line embryonic stem cell
21 chr1:214529000-214538400 Strong transcription HUES48 Cell Line embryonic stem cell
22 chr1:214529000-214584200 Weak transcription Brain Anterior Caudate brain
23 chr1:214529200-214539600 Strong transcription Fetal Stomach stomach
24 chr1:214529400-214561800 Weak transcription Brain Angular Gyrus brain
25 chr1:214529600-214544600 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr1:214531600-214543400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:214531600-214556800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
28 chr1:214533000-214539200 Strong transcription Fetal Lung lung
29 chr1:214533200-214538400 Strong transcription NHLF lung
30 chr1:214533200-214538600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr1:214533400-214538800 Strong transcription H1 Cell Line embryonic stem cell
32 chr1:214533600-214538600 Strong transcription ES-I3 Cell Line embryonic stem cell
33 chr1:214534000-214538800 Strong transcription H9 Cell Line embryonic stem cell
34 chr1:214534000-214557000 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr1:214534800-214538800 Enhancers Skeletal Muscle Female skeletal muscle
36 chr1:214534800-214540400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
37 chr1:214535000-214538400 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr1:214535000-214538600 Strong transcription Lung lung
39 chr1:214535000-214538600 Genic enhancers Osteobl bone
40 chr1:214535200-214542800 Weak transcription A549 lung
41 chr1:214535400-214538800 Genic enhancers Fetal Muscle Leg muscle
42 chr1:214535600-214538800 Genic enhancers NHDF-Ad bronchial
43 chr1:214536000-214539000 Strong transcription Placenta Placenta
44 chr1:214536000-214545400 Strong transcription NH-A brain
45 chr1:214536200-214538600 Genic enhancers Muscle Satellite Cultured Cells --
46 chr1:214536200-214551000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr1:214536400-214538800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr1:214536400-214539000 Strong transcription HMEC breast
49 chr1:214536800-214538400 Enhancers Fetal Intestine Large intestine
50 chr1:214537000-214538400 Genic enhancers Adipose Nuclei Adipose

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Last update: Aug 31, 2015