Variant report

Variant	rs3013442
Chromosome Location	chr1:214562113-214562114
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10735513	0.95[AMR][1000 genomes]
rs11120308	0.93[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11120309	0.93[CEU][hapmap];0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1135352	1.00[CEU][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11587662	0.82[AMR][1000 genomes]
rs1472439	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1472443	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17731174	1.00[YRI][hapmap]
rs2291829	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2936014	0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2936015	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2936016	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2936017	1.00[CEU][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2936018	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3002297	0.82[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3002298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3002299	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3002300	1.00[CEU][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3002301	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3002303	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3002305	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3002306	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3002307	1.00[CEU][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3002308	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3002309	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3002312	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3013446	1.00[ASW][hapmap];0.93[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3013448	0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3013451	0.93[CEU][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3013452	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3013455	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4129186	0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4233299	0.85[EUR][1000 genomes]
rs4311855	0.93[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4578186	1.00[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.86[MKK][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4655248	0.99[ASN][1000 genomes]
rs4655342	1.00[ASW][hapmap];0.93[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6657368	1.00[ASW][hapmap];0.93[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6670349	0.89[AMR][1000 genomes]
rs7413877	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7513473	0.88[ASN][1000 genomes]
rs7513565	0.87[ASN][1000 genomes]
rs7524206	0.86[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7530350	0.93[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7550799	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:214524400-214574400	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:214529000-214584200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:214537600-214577000	Weak transcription	Stomach Mucosa	stomach
5	chr1:214541600-214566600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:214546200-214576000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:214546200-214576200	Weak transcription	Right Atrium	heart
8	chr1:214547800-214576200	Weak transcription	Fetal Heart	heart
9	chr1:214553200-214562400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:214554000-214562200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:214554000-214568200	Weak transcription	Liver	Liver
12	chr1:214554000-214577800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:214554200-214577800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:214555000-214562400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:214556000-214576000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:214556800-214573400	Weak transcription	Fetal Kidney	kidney
17	chr1:214557600-214568600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:214557800-214563600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr1:214557800-214566600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:214557800-214576200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:214557800-214578000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:214557800-214589000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:214558000-214562200	Weak transcription	Colon Smooth Muscle	Colon
24	chr1:214558000-214564000	Weak transcription	Esophagus	oesophagus
25	chr1:214558000-214564000	Weak transcription	Ovary	ovary
26	chr1:214558000-214565400	Weak transcription	Aorta	Aorta
27	chr1:214558000-214565800	Weak transcription	A549	lung
28	chr1:214558000-214566000	Weak transcription	Lung	lung
29	chr1:214558000-214566000	Weak transcription	Spleen	Spleen
30	chr1:214558000-214566200	Weak transcription	HepG2	liver
31	chr1:214558000-214567200	Weak transcription	Fetal Lung	lung
32	chr1:214558000-214576600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr1:214558000-214578200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr1:214558200-214566400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr1:214558200-214570600	Weak transcription	Dnd41	blood
36	chr1:214558200-214584000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:214558400-214563800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:214558400-214563800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr1:214558400-214564000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr1:214558400-214565200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr1:214558400-214565800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr1:214558600-214563600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr1:214558600-214563800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr1:214558600-214565800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr1:214558600-214569000	Weak transcription	Psoas Muscle	Psoas
46	chr1:214559400-214563800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:214559800-214562800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr1:214560000-214592000	Weak transcription	Hela-S3	cervix
49	chr1:214560400-214563800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr1:214560400-214563800	Weak transcription	Fetal Muscle Trunk	muscle

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