The 2.0 version of rSNPBase

Variant report

Variant rs6540819
Chromosome Location chr1:214478459-214478460
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214455600-214487800 Weak transcription Primary B cells from cord blood blood
2 chr1:214455600-214489000 Weak transcription Ovary ovary
3 chr1:214456400-214491800 Weak transcription Pancreas Pancrea
4 chr1:214456600-214483200 Weak transcription Primary B cells from peripheral blood blood
5 chr1:214459200-214483000 Weak transcription Liver Liver
6 chr1:214459200-214491400 Weak transcription Duodenum Mucosa Duodenum
7 chr1:214461600-214483000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
8 chr1:214461800-214482800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr1:214462000-214491800 Weak transcription NHEK skin
10 chr1:214462600-214483200 Weak transcription Dnd41 blood
11 chr1:214463600-214479400 Weak transcription Fetal Adrenal Gland Adrenal Gland
12 chr1:214464000-214478600 Weak transcription Lung lung
13 chr1:214469400-214488600 Weak transcription Fetal Thymus thymus
14 chr1:214469600-214482200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr1:214469600-214488400 Weak transcription Thymus Thymus
16 chr1:214470200-214481000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr1:214470600-214481600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr1:214470600-214482400 Weak transcription GM12878-XiMat blood
19 chr1:214470600-214488400 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:214470600-214488800 Weak transcription HMEC breast
21 chr1:214471000-214478600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr1:214471000-214488000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr1:214471000-214489000 Weak transcription A549 lung
24 chr1:214471000-214489400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr1:214471000-214517400 Weak transcription Fetal Kidney kidney
26 chr1:214471200-214484600 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr1:214471400-214484400 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr1:214475000-214478600 Weak transcription Esophagus oesophagus
29 chr1:214476000-214483000 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr1:214476000-214483200 Weak transcription Primary T cells fromperipheralblood blood
31 chr1:214476000-214483200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr1:214476200-214482200 Weak transcription Primary T helper naive cells from peripheral blood blood
33 chr1:214476200-214483400 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr1:214476600-214492200 Weak transcription K562 blood
35 chr1:214476800-214481600 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr1:214476800-214483000 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr1:214476800-214483000 Weak transcription Primary T killer naive cells fromperipheralblood blood
38 chr1:214477000-214478600 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr1:214477000-214484600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr1:214477000-214489800 Weak transcription NH-A brain
41 chr1:214477200-214479600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr1:214477200-214483000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr1:214477200-214483200 Weak transcription Fetal Lung lung
44 chr1:214477200-214486000 Weak transcription Right Atrium heart
45 chr1:214477200-214487000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:214477200-214491600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr1:214477200-214492200 Weak transcription Aorta Aorta
48 chr1:214477400-214478600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr1:214477400-214478600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
50 chr1:214477400-214478600 Weak transcription Fetal Stomach stomach

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Last update: Aug 31, 2015