Variant report

Variant	rs9970083
Chromosome Location	chr1:214457286-214457287
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214457192..214459073-chr1:214461952..214463618,2	K562	blood:
2	chr1:214456940..214458868-chr1:214501430..214504158,3	MCF-7	breast:
3	chr1:214454710..214457549-chr7:26301869..26304423,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1005709	0.83[ASN][1000 genomes]
rs10779613	0.91[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs10864092	0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs11120290	0.84[ASN][1000 genomes]
rs11120292	0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11120295	0.91[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs1134647	0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs12024395	0.82[ASN][1000 genomes]
rs12057464	0.85[ASN][1000 genomes]
rs12124666	0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2270704	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2291830	0.91[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs4655242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4655245	0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4655335	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6419473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540817	0.91[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs6540818	0.84[ASN][1000 genomes]
rs6540819	0.91[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs6540820	0.82[ASN][1000 genomes]
rs6540821	0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6540822	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6660940	0.81[ASN][1000 genomes]
rs6662275	0.82[ASN][1000 genomes]
rs6662864	0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs6665343	0.91[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs6673096	0.81[ASN][1000 genomes]
rs6676709	0.82[CHB][hapmap]
rs6687411	0.90[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs6691083	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6700976	0.91[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs6701764	0.91[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7419021	0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs7512745	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9429915	0.82[ASN][1000 genomes]
rs9429918	0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs9430130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9970083	RPS6KC1	cis	cerebellum	SCAN

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214455400-214463200	Weak transcription	Lung	lung
2	chr1:214455600-214487800	Weak transcription	Primary B cells from cord blood	blood
3	chr1:214455600-214489000	Weak transcription	Ovary	ovary
4	chr1:214455800-214463200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:214456000-214458400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:214456000-214458400	Weak transcription	Fetal Intestine Large	intestine
7	chr1:214456000-214458800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:214456000-214469200	Weak transcription	NH-A	brain
9	chr1:214456200-214457400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:214456200-214457800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr1:214456200-214458200	Weak transcription	A549	lung
12	chr1:214456200-214458400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr1:214456200-214459000	Weak transcription	Gastric	stomach
14	chr1:214456200-214459200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr1:214456200-214462400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:214456200-214463000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:214456200-214463800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:214456200-214469800	Weak transcription	Fetal Lung	lung
19	chr1:214456400-214457400	Flanking Active TSS	HepG2	liver
20	chr1:214456400-214458200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:214456400-214458400	Weak transcription	Fetal Intestine Small	intestine
22	chr1:214456400-214458400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr1:214456400-214459400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:214456400-214463000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:214456400-214463000	Weak transcription	Psoas Muscle	Psoas
26	chr1:214456400-214463000	Weak transcription	Right Atrium	heart
27	chr1:214456400-214468800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:214456400-214470000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr1:214456400-214491800	Weak transcription	Pancreas	Pancrea
30	chr1:214456600-214457800	Weak transcription	Liver	Liver
31	chr1:214456600-214458200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr1:214456600-214458400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:214456600-214459000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr1:214456600-214459000	Weak transcription	Thymus	Thymus
35	chr1:214456600-214459200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr1:214456600-214460800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr1:214456600-214461200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr1:214456600-214461200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr1:214456600-214463000	Weak transcription	Fetal Muscle Leg	muscle
40	chr1:214456600-214463000	Weak transcription	Left Ventricle	heart
41	chr1:214456600-214467800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:214456600-214483200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr1:214456800-214458200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr1:214456800-214458200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr1:214456800-214458200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:214456800-214458200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:214456800-214458200	Weak transcription	K562	blood
48	chr1:214456800-214458400	Weak transcription	Primary T cells from cord blood	blood
49	chr1:214456800-214458600	Weak transcription	GM12878-XiMat	blood
50	chr1:214456800-214458600	Weak transcription	NHEK	skin

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