The 2.0 version of rSNPBase

Variant report

Variant rs6540820
Chromosome Location chr1:214484575-214484576
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214455600-214487800 Weak transcription Primary B cells from cord blood blood
2 chr1:214455600-214489000 Weak transcription Ovary ovary
3 chr1:214456400-214491800 Weak transcription Pancreas Pancrea
4 chr1:214459200-214491400 Weak transcription Duodenum Mucosa Duodenum
5 chr1:214462000-214491800 Weak transcription NHEK skin
6 chr1:214469400-214488600 Weak transcription Fetal Thymus thymus
7 chr1:214469600-214488400 Weak transcription Thymus Thymus
8 chr1:214470600-214488400 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr1:214470600-214488800 Weak transcription HMEC breast
10 chr1:214471000-214488000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr1:214471000-214489000 Weak transcription A549 lung
12 chr1:214471000-214489400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr1:214471000-214517400 Weak transcription Fetal Kidney kidney
14 chr1:214471200-214484600 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr1:214476600-214492200 Weak transcription K562 blood
16 chr1:214477000-214484600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr1:214477000-214489800 Weak transcription NH-A brain
18 chr1:214477200-214486000 Weak transcription Right Atrium heart
19 chr1:214477200-214487000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:214477200-214491600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:214477200-214492200 Weak transcription Aorta Aorta
22 chr1:214477400-214487600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr1:214477400-214489800 Weak transcription NHLF lung
24 chr1:214477400-214492200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr1:214477400-214506400 Weak transcription Colon Smooth Muscle Colon
26 chr1:214477400-214506400 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr1:214477400-214511000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr1:214477600-214484800 Weak transcription Fetal Brain Female brain
29 chr1:214477800-214488000 Weak transcription Fetal Intestine Large intestine
30 chr1:214478400-214484600 Weak transcription Psoas Muscle Psoas
31 chr1:214478600-214488800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:214478800-214484600 Weak transcription ES-WA7 Cell Line embryonic stem cell
33 chr1:214478800-214491800 Weak transcription Spleen Spleen
34 chr1:214478800-214492200 Weak transcription Esophagus oesophagus
35 chr1:214479000-214486000 Weak transcription Fetal Muscle Trunk muscle
36 chr1:214479000-214489000 Weak transcription Stomach Smooth Muscle stomach
37 chr1:214479000-214503000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr1:214479200-214487600 Weak transcription Brain Germinal Matrix brain
39 chr1:214479200-214491800 Weak transcription Lung lung
40 chr1:214479400-214493000 Enhancers Fetal Heart heart
41 chr1:214479800-214490000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr1:214480000-214484600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr1:214480000-214485800 Weak transcription Breast Myoepithelial Primary Cells Breast
44 chr1:214480000-214486000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr1:214480200-214485800 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr1:214480200-214490800 Weak transcription Fetal Intestine Small intestine
47 chr1:214481000-214485400 Weak transcription HepG2 liver
48 chr1:214482200-214485200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr1:214482200-214486000 Weak transcription Right Ventricle heart
50 chr1:214482200-214510600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015