The 2.0 version of rSNPBase

Variant report

Variant rs6687411
Chromosome Location chr1:214477296-214477297
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214455600-214487800 Weak transcription Primary B cells from cord blood blood
2 chr1:214455600-214489000 Weak transcription Ovary ovary
3 chr1:214456400-214491800 Weak transcription Pancreas Pancrea
4 chr1:214456600-214483200 Weak transcription Primary B cells from peripheral blood blood
5 chr1:214457200-214478200 Weak transcription Primary T regulatory cells fromperipheralblood blood
6 chr1:214459200-214483000 Weak transcription Liver Liver
7 chr1:214459200-214491400 Weak transcription Duodenum Mucosa Duodenum
8 chr1:214461600-214483000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:214461800-214482800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr1:214462000-214491800 Weak transcription NHEK skin
11 chr1:214462600-214483200 Weak transcription Dnd41 blood
12 chr1:214463400-214478200 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr1:214463600-214479400 Weak transcription Fetal Adrenal Gland Adrenal Gland
14 chr1:214464000-214478600 Weak transcription Lung lung
15 chr1:214466400-214478400 Weak transcription Fetal Intestine Small intestine
16 chr1:214469400-214488600 Weak transcription Fetal Thymus thymus
17 chr1:214469600-214482200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:214469600-214488400 Weak transcription Thymus Thymus
19 chr1:214470200-214481000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr1:214470600-214478200 Weak transcription HepG2 liver
21 chr1:214470600-214481600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:214470600-214482400 Weak transcription GM12878-XiMat blood
23 chr1:214470600-214488400 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr1:214470600-214488800 Weak transcription HMEC breast
25 chr1:214471000-214478200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:214471000-214478400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr1:214471000-214478600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr1:214471000-214488000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:214471000-214489000 Weak transcription A549 lung
30 chr1:214471000-214489400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr1:214471000-214517400 Weak transcription Fetal Kidney kidney
32 chr1:214471200-214478400 Weak transcription ES-WA7 Cell Line embryonic stem cell
33 chr1:214471200-214484600 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr1:214471400-214484400 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:214475000-214478600 Weak transcription Esophagus oesophagus
36 chr1:214475600-214478200 Enhancers Fetal Heart heart
37 chr1:214475800-214478200 Enhancers Fetal Brain Male brain
38 chr1:214476000-214483000 Weak transcription Primary T helper cells fromperipheralblood blood
39 chr1:214476000-214483200 Weak transcription Primary T cells fromperipheralblood blood
40 chr1:214476000-214483200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
41 chr1:214476200-214482200 Weak transcription Primary T helper naive cells from peripheral blood blood
42 chr1:214476200-214483400 Weak transcription Monocytes-CD14+_RO01746 blood
43 chr1:214476400-214477400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:214476400-214477400 Enhancers Right Ventricle heart
45 chr1:214476600-214477400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
46 chr1:214476600-214477400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
47 chr1:214476600-214477400 Enhancers Brain Germinal Matrix brain
48 chr1:214476600-214477400 Enhancers Fetal Muscle Leg muscle
49 chr1:214476600-214477400 Enhancers Fetal Stomach stomach
50 chr1:214476600-214477400 Active TSS Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015