Variant report

Variant	rs34137349
Chromosome Location	chr2:171662369-171662370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10168078	0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1065651	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10930440	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11675773	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12463871	0.82[AMR][1000 genomes]
rs12464863	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12472397	0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs12692960	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1362488	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1420378	0.86[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1420379	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1420380	0.81[AMR][1000 genomes]
rs1420381	0.80[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes]
rs17694562	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17694708	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17751035	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17751072	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17751234	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1894920	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1978340	0.94[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1990653	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2111000	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2216134	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2287110	0.94[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2287111	0.87[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2356234	0.80[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs2356236	0.84[EUR][1000 genomes]
rs2883888	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34436957	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35127716	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35872782	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3762553	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3762556	0.84[EUR][1000 genomes]
rs3791871	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3791872	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3791878	1.00[ASW][hapmap];0.86[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4667657	0.81[AMR][1000 genomes]
rs4668315	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4668316	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55693618	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55804482	0.81[AMR][1000 genomes]
rs55923006	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56330225	0.81[AMR][1000 genomes]
rs56364811	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56989102	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58919807	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62168369	0.81[AMR][1000 genomes]
rs62168370	0.81[AMR][1000 genomes]
rs62168371	0.82[AMR][1000 genomes]
rs62168373	0.82[AMR][1000 genomes]
rs62168376	0.82[AMR][1000 genomes]
rs62168396	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62168397	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62168399	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62168400	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62168401	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62168405	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62168409	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62168446	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62168447	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62168448	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62168454	0.82[ASN][1000 genomes]
rs6742220	0.81[AMR][1000 genomes]
rs6755814	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6759584	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72887356	0.81[AMR][1000 genomes]
rs72887361	0.82[AMR][1000 genomes]
rs72887372	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7568115	0.87[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7600585	0.87[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806894	chr2:171651783-171679041	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34137349	NOSTRIN	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171642400-171669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:171659200-171668600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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