Variant report

Variant	rs35872782
Chromosome Location	chr2:171619243-171619244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171616652..171619291-chr2:171620121..171623028,3	K562	blood:
2	chr2:171603392..171605168-chr2:171617778..171619766,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10168078	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1065651	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10930440	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1110002	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1134626	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11675773	0.97[ASN][1000 genomes]
rs12463871	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12464863	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12469431	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12472397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12692960	0.97[ASN][1000 genomes]
rs1362488	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1420378	0.93[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1420379	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1420380	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1420381	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17694562	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17694708	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17751035	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17751072	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17751234	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1861464	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1894920	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1978340	0.81[CHD][hapmap];0.92[JPT][hapmap]
rs1990653	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2111000	0.97[ASN][1000 genomes]
rs2216134	0.97[ASN][1000 genomes]
rs2287110	0.87[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs2287111	0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2356234	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2883888	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34137349	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34436957	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35127716	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3791878	0.85[JPT][hapmap]
rs4667657	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4668308	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4668315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4668316	0.97[ASN][1000 genomes]
rs55693618	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55799517	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55804482	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55923006	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56024406	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56330225	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56364811	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56989102	0.81[AMR][1000 genomes]
rs58919807	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61246559	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62168365	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62168366	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62168367	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62168369	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62168370	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62168371	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62168373	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168376	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168396	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62168397	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62168399	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62168400	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62168401	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62168405	0.97[ASN][1000 genomes]
rs62168409	0.97[ASN][1000 genomes]
rs62168446	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62168447	0.93[ASN][1000 genomes]
rs62168448	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62169546	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62169547	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62169548	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6712113	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6742220	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6755814	0.80[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6759584	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs72885487	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72887356	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72887361	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72887372	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7568115	0.93[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes]
rs7600585	0.93[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35872782	SP9	cis	cerebellum	SCAN
rs35872782	NOSTRIN	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171613200-171626800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:171618600-171626600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr2:171619200-171620200	Enhancers	K562	blood

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