Variant report

Variant	rs61246559
Chromosome Location	chr2:171580370-171580371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1065651	0.82[AMR][1000 genomes]
rs1110002	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1134626	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12463871	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12469431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12472397	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1362488	0.82[AMR][1000 genomes]
rs1420378	0.81[AMR][1000 genomes]
rs1420379	0.81[AMR][1000 genomes]
rs1420380	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1420381	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17694562	0.82[AMR][1000 genomes]
rs17694708	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17751035	0.82[AMR][1000 genomes]
rs17751072	0.82[AMR][1000 genomes]
rs17751234	0.82[AMR][1000 genomes]
rs1861464	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1990653	0.82[AMR][1000 genomes]
rs2356234	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34436957	0.81[AMR][1000 genomes]
rs35127716	0.88[AMR][1000 genomes]
rs35872782	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4667657	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4668308	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4668315	0.82[AMR][1000 genomes]
rs55693618	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55799517	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55804482	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55923006	0.84[AMR][1000 genomes]
rs56024406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56330225	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56364811	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs58919807	0.81[AMR][1000 genomes]
rs62168365	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62168366	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62168367	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62168369	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62168370	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62168371	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62168373	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62168376	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62168396	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62168397	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62168399	0.82[AMR][1000 genomes]
rs62168400	0.82[AMR][1000 genomes]
rs62168401	0.82[AMR][1000 genomes]
rs62168446	0.88[AMR][1000 genomes]
rs62168448	0.88[AMR][1000 genomes]
rs62169546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62169547	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62169548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6712113	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6742220	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72885464	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72885487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72887356	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72887361	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72887372	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7600585	0.82[AMR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171574600-171585600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:171577800-171586200	Weak transcription	Fetal Intestine Large	intestine
4	chr2:171578800-171580400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:171579800-171580400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:171580000-171580400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:171580000-171580400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:171580000-171580600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:171580200-171580400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:171580200-171580400	Enhancers	Fetal Lung	lung
11	chr2:171580200-171589600	Weak transcription	Fetal Intestine Small	intestine

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