Variant report

Variant	rs62168369
Chromosome Location	chr2:171604766-171604767
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr2:171604311-171604801	K562	blood:	n/a	n/a
2	CEBPB	chr2:171604440-171604783	IMR90	lung:	n/a	n/a
3	FOS	chr2:171604426-171604833	MCF10A-Er-Src	breast:	n/a	chr2:171604646-171604654
4	ATF1	chr2:171604453-171604808	K562	blood:	n/a	n/a
5	EP300	chr2:171604529-171604772	K562	blood:	n/a	n/a
6	ARID3A	chr2:171604412-171604856	K562	blood:	n/a	n/a
7	MAFK	chr2:171604465-171604773	IMR90	lung:	n/a	chr2:171604647-171604656 chr2:171604643-171604657 chr2:171604646-171604656
8	JUN	chr2:171604449-171604827	K562	blood:	n/a	chr2:171604646-171604654
9	FOS	chr2:171604379-171604838	MCF10A-Er-Src	breast:	n/a	chr2:171604646-171604654
10	MAFK	chr2:171604432-171604796	K562	blood:	n/a	chr2:171604647-171604656 chr2:171604643-171604657 chr2:171604646-171604656
11	JUND	chr2:171604380-171604840	K562	blood:	n/a	chr2:171604646-171604654
12	MYC	chr2:171604471-171604796	K562	blood:	n/a	chr2:171604646-171604655
13	MYC	chr2:171604408-171604837	MCF10A-Er-Src	breast:	n/a	chr2:171604646-171604655
14	MAX	chr2:171604543-171604839	K562	blood:	n/a	chr2:171604646-171604655
15	STAT3	chr2:171604380-171604786	MCF10A-Er-Src	breast:	n/a	n/a
16	MYC	chr2:171604489-171604835	MCF10A-Er-Src	breast:	n/a	chr2:171604646-171604655
17	JUN	chr2:171603862-171604928	K562	blood:	n/a	chr2:171604646-171604654
18	STAT3	chr2:171604505-171604787	MCF10A-Er-Src	breast:	n/a	n/a
19	STAT3	chr2:171604511-171604786	MCF10A-Er-Src	breast:	n/a	n/a
20	POLR2A	chr2:171604346-171604766	MCF10A-Er-Src	breast:	n/a	n/a
21	ATF3	chr2:171604409-171604798	K562	blood:	n/a	n/a
22	STAT3	chr2:171604512-171604777	MCF10A-Er-Src	breast:	n/a	n/a
23	MAFF	chr2:171604481-171604782	K562	blood:	n/a	chr2:171604643-171604657
24	ZNF384	chr2:171604272-171604928	K562	blood:	n/a	n/a
25	FOS	chr2:171604441-171604833	MCF10A-Er-Src	breast:	n/a	chr2:171604646-171604654
26	BHLHE40	chr2:171604296-171604789	K562	blood:	n/a	n/a
27	FOS	chr2:171604427-171604838	MCF10A-Er-Src	breast:	n/a	chr2:171604646-171604654

No.	Distal block	Cell Line	Cell type
1	chr2:171602544..171604977-chr2:171607272..171609245,2	K562	blood:
2	chr2:171603347..171605855-chr2:171623279..171625744,2	K562	blood:
3	chr2:171571145..171574823-chr2:171602056..171606730,4	K562	blood:
4	chr2:171525220..171526847-chr2:171603217..171605132,2	K562	blood:
5	chr2:171081877..171083554-chr2:171602935..171605209,2	K562	blood:
6	chr2:171594157..171598805-chr2:171599016..171605066,9	K562	blood:
7	chr2:171603392..171605168-chr2:171617778..171619766,2	K562	blood:
8	chr2:171599446..171601204-chr2:171604629..171607257,2	K562	blood:
9	chr2:171571145..171574004-chr2:171604005..171606730,2	K562	blood:

Variant related genes	Relation type
EIF2S2P4	TF binding region
ENSG00000128692	Chromatin interaction
ENSG00000204335	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10168078	0.87[ASN][1000 genomes]
rs1065651	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10930440	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1110002	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1134626	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11675773	0.91[ASN][1000 genomes]
rs12463871	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12464863	0.87[ASN][1000 genomes]
rs12469431	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12472397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12692960	0.91[ASN][1000 genomes]
rs1362488	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1420378	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1420379	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1420380	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420381	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694562	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17694708	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17751035	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17751072	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17751234	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1861464	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1894920	0.87[ASN][1000 genomes]
rs1990653	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2111000	0.91[ASN][1000 genomes]
rs2216134	0.91[ASN][1000 genomes]
rs2287110	0.84[ASN][1000 genomes]
rs2287111	0.86[ASN][1000 genomes]
rs2356234	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2883888	0.82[AMR][1000 genomes]
rs34137349	0.81[AMR][1000 genomes]
rs34436957	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35127716	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35872782	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4667657	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668308	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668315	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4668316	0.91[ASN][1000 genomes]
rs55693618	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55799517	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55804482	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923006	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56024406	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56330225	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364811	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56989102	0.81[AMR][1000 genomes]
rs58919807	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61246559	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62168365	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168366	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168367	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168370	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168371	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168373	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62168376	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62168396	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62168397	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62168399	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168400	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168401	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168405	0.91[ASN][1000 genomes]
rs62168409	0.91[ASN][1000 genomes]
rs62168446	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62168447	0.87[ASN][1000 genomes]
rs62168448	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62169546	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62169547	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62169548	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6712113	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742220	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759584	0.91[ASN][1000 genomes]
rs72885487	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72887356	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72887361	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72887372	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7568115	0.87[ASN][1000 genomes]
rs7600585	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963746	chr2:171602620-171609432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171601600-171606400	Weak transcription	Gastric	stomach
3	chr2:171604000-171604800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:171604000-171605200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:171604200-171605200	Enhancers	Stomach Mucosa	stomach
6	chr2:171604600-171604800	Bivalent Enhancer	Primary B cells from cord blood	blood
7	chr2:171604600-171605200	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links