Variant report

Variant	rs62168366
Chromosome Location	chr2:171595040-171595041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171593069..171595980-chr2:171599016..171601460,4	K562	blood:
2	chr2:171594157..171598805-chr2:171599016..171605066,9	K562	blood:
3	chr2:171592976..171595346-chr2:171619410..171621517,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10168078	0.83[ASN][1000 genomes]
rs1065651	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10930440	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1110002	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1134626	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11675773	0.87[ASN][1000 genomes]
rs12463871	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12464863	0.83[ASN][1000 genomes]
rs12469431	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12472397	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12692960	0.87[ASN][1000 genomes]
rs1362488	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1420378	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1420379	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1420380	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1420381	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17694562	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17694708	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17751035	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17751072	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17751234	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1861464	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1894920	0.83[ASN][1000 genomes]
rs1990653	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2111000	0.87[ASN][1000 genomes]
rs2216134	0.87[ASN][1000 genomes]
rs2287110	0.81[ASN][1000 genomes]
rs2287111	0.82[ASN][1000 genomes]
rs2356234	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2883888	0.81[AMR][1000 genomes]
rs34436957	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35127716	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35872782	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4667657	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4668308	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4668315	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4668316	0.87[ASN][1000 genomes]
rs55693618	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55799517	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55804482	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55923006	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56024406	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56330225	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56364811	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58919807	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61246559	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62168365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168367	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168369	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168370	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168371	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168373	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62168376	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62168396	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62168397	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62168399	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62168400	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62168401	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62168405	0.87[ASN][1000 genomes]
rs62168409	0.87[ASN][1000 genomes]
rs62168446	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62168447	0.83[ASN][1000 genomes]
rs62168448	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62169546	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62169547	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62169548	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6712113	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6742220	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6759584	0.87[ASN][1000 genomes]
rs72885464	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72885487	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72887356	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72887361	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72887372	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7568115	0.83[ASN][1000 genomes]
rs7600585	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171591400-171595200	Weak transcription	Fetal Intestine Large	intestine
3	chr2:171591600-171595200	Weak transcription	Placenta	Placenta
4	chr2:171593200-171598000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:171593600-171595200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:171593600-171600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:171593800-171595400	Enhancers	NHEK	skin
8	chr2:171594000-171597200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:171594000-171600200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr2:171594200-171596800	Enhancers	Stomach Mucosa	stomach
11	chr2:171594200-171597600	Enhancers	HMEC	breast
12	chr2:171594400-171595600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:171594400-171596400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:171594400-171596400	Enhancers	HSMM	muscle
15	chr2:171594400-171596600	Enhancers	Fetal Intestine Small	intestine
16	chr2:171594400-171597400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:171594600-171595200	Weak transcription	NH-A	brain
18	chr2:171594600-171596600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:171595000-171597800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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