Variant report

Variant	rs2111000
Chromosome Location	chr2:171644050-171644051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171633926..171636213-chr2:171641664..171644131,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10048650	0.84[AFR][1000 genomes]
rs10168078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1065651	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930440	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11675773	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12463871	0.95[ASN][1000 genomes]
rs12464863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12472397	0.93[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs12692960	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362488	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420378	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420379	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420380	0.91[ASN][1000 genomes]
rs1420381	0.93[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs1420389	0.81[AFR][1000 genomes]
rs17694562	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694708	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751035	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751072	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751234	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861462	0.81[YRI][hapmap]
rs1894920	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1978340	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs1990653	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2058726	0.81[YRI][hapmap]
rs2192987	0.90[YRI][hapmap]
rs2216134	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287110	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2287111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2356234	0.93[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs2883887	0.84[AFR][1000 genomes]
rs2883888	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34137349	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34436957	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35127716	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35872782	0.97[ASN][1000 genomes]
rs3791878	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs4411661	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4667657	0.91[ASN][1000 genomes]
rs4668308	0.91[ASN][1000 genomes]
rs4668312	0.85[YRI][hapmap]
rs4668315	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668316	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693618	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55799517	0.91[ASN][1000 genomes]
rs55804482	0.91[ASN][1000 genomes]
rs55923006	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56024406	0.83[ASN][1000 genomes]
rs56330225	0.91[ASN][1000 genomes]
rs56364811	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56989102	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58919807	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168365	0.87[ASN][1000 genomes]
rs62168366	0.87[ASN][1000 genomes]
rs62168367	0.89[ASN][1000 genomes]
rs62168369	0.91[ASN][1000 genomes]
rs62168370	0.91[ASN][1000 genomes]
rs62168371	0.91[ASN][1000 genomes]
rs62168373	0.95[ASN][1000 genomes]
rs62168376	0.95[ASN][1000 genomes]
rs62168396	0.98[ASN][1000 genomes]
rs62168397	0.98[ASN][1000 genomes]
rs62168399	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168400	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168401	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168405	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168409	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168446	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168447	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168448	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62169547	0.83[ASN][1000 genomes]
rs62169548	0.83[ASN][1000 genomes]
rs6712113	0.91[ASN][1000 genomes]
rs6721280	0.84[AFR][1000 genomes]
rs6733154	0.80[AFR][1000 genomes]
rs6742220	0.91[ASN][1000 genomes]
rs6749003	0.84[AFR][1000 genomes]
rs6755814	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6759584	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72887356	0.91[ASN][1000 genomes]
rs72887361	0.95[ASN][1000 genomes]
rs72887372	0.98[ASN][1000 genomes]
rs7568115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7600585	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171629600-171658800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:171635200-171649800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:171635600-171646800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:171642400-171669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:171643000-171645800	Weak transcription	Pancreas	Pancrea
6	chr2:171643600-171644400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:171643600-171644400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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