Variant report

Variant	rs17751035
Chromosome Location	chr2:171634499-171634500
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171633926..171636213-chr2:171641664..171644131,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC007405.7.1-1	chr2:171634154-171635195	XLOC_001748
2	lnc-AC007405.7.1-1	chr2:171634154-171634658	XLOC_001748
3	lnc-AC007405.7.1-1	chr2:171634154-171635130	XLOC_001748
4	lnc-AC007405.7.1-1	chr2:171634154-171634757	NONHSAT075425
5	lnc-AC007405.7.1-1	chr2:171634154-171634757	NONHSAT075426

No data

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10168078	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1065651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930440	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1110002	0.84[AMR][1000 genomes]
rs1134626	0.84[AMR][1000 genomes]
rs11675773	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12463871	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12464863	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12469431	0.82[AMR][1000 genomes]
rs12472397	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12692960	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420378	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420379	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420380	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1420381	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17694562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694708	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861464	0.84[AMR][1000 genomes]
rs1894920	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1978340	0.83[EUR][1000 genomes]
rs1990653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2111000	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216134	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287110	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2287111	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2356234	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2883888	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34137349	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34436957	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35127716	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35872782	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4411661	0.84[EUR][1000 genomes]
rs4667657	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4668308	0.91[ASN][1000 genomes]
rs4668315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668316	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693618	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55799517	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55804482	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55923006	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56024406	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56330225	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56364811	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56989102	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58919807	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61246559	0.82[AMR][1000 genomes]
rs62168365	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62168366	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62168367	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62168369	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168370	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168371	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168373	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62168376	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62168396	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168397	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168405	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168409	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168446	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168447	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168448	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62169546	0.82[AMR][1000 genomes]
rs62169547	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62169548	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6712113	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6742220	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6755814	0.84[ASN][1000 genomes]
rs6759584	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72885487	0.82[AMR][1000 genomes]
rs72887356	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72887361	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72887372	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7568115	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7600585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171629400-171641000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr2:171629600-171658800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:171630000-171635400	Weak transcription	Fetal Intestine Large	intestine
4	chr2:171630000-171635800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:171630200-171641800	Weak transcription	K562	blood
6	chr2:171633400-171634800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:171634000-171634600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:171634000-171634800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:171634000-171635200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:171634400-171635400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:171634400-171635400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links