Variant report

Variant	rs6712113
Chromosome Location	chr2:171600254-171600255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:171593069..171595980-chr2:171599016..171601460,4	K562	blood:
2	chr2:171598820..171602992-chr2:171626434..171628904,5	K562	blood:
3	chr2:171594157..171598805-chr2:171599016..171605066,9	K562	blood:
4	chr2:171599327..171601444-chr2:171623384..171626338,2	K562	blood:
5	chr2:171598979..171601021-chr2:171601414..171603949,2	K562	blood:
6	chr2:171569652..171572636-chr2:171598669..171601244,2	K562	blood:
7	chr2:171598608..171603078-chr2:171626081..171629316,7	K562	blood:
8	chr2:171599446..171601204-chr2:171604629..171607257,2	K562	blood:
9	chr2:171599691..171602406-chr2:171784049..171787334,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000222033	Chromatin interaction
ENSG00000234350	Chromatin interaction
ENSG00000115806	Chromatin interaction
ENSG00000204335	Chromatin interaction
ENSG00000239467	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10168078	0.87[ASN][1000 genomes]
rs1065651	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10930440	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1110002	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1134626	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11675773	0.91[ASN][1000 genomes]
rs12463871	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12464863	0.87[ASN][1000 genomes]
rs12469431	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12472397	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12692960	0.91[ASN][1000 genomes]
rs1362488	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1420378	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1420379	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1420380	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420381	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694562	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17694708	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17751035	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17751072	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17751234	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1861464	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1894920	0.87[ASN][1000 genomes]
rs1990653	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2111000	0.91[ASN][1000 genomes]
rs2216134	0.91[ASN][1000 genomes]
rs2287110	0.84[ASN][1000 genomes]
rs2287111	0.86[ASN][1000 genomes]
rs2356234	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34436957	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35127716	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35872782	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4667657	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668308	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668315	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4668316	0.91[ASN][1000 genomes]
rs55693618	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55799517	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55804482	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923006	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56024406	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56330225	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364811	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58919807	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61246559	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62168365	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168366	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168367	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168369	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168370	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168371	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168373	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62168376	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62168396	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62168397	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62168399	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168400	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168401	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168405	0.91[ASN][1000 genomes]
rs62168409	0.91[ASN][1000 genomes]
rs62168446	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62168447	0.87[ASN][1000 genomes]
rs62168448	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62169546	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62169547	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62169548	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6742220	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759584	0.91[ASN][1000 genomes]
rs72885487	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72887356	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72887361	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72887372	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7568115	0.87[ASN][1000 genomes]
rs7600585	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171593600-171600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:171596200-171601200	Weak transcription	HSMMtube	muscle
4	chr2:171597600-171603800	Weak transcription	HMEC	breast
5	chr2:171597800-171604000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:171598000-171603800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:171598400-171600600	Enhancers	Fetal Intestine Small	intestine
8	chr2:171599800-171600400	Enhancers	HepG2	liver
9	chr2:171599800-171601800	Enhancers	Stomach Mucosa	stomach
10	chr2:171600000-171600600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr2:171600200-171600400	Enhancers	Hela-S3	cervix
12	chr2:171600200-171600400	Active TSS	Monocytes-CD14+_RO01746	blood
13	chr2:171600200-171600600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr2:171600200-171600600	Weak transcription	Fetal Intestine Large	intestine
15	chr2:171600200-171600800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr2:171600200-171601200	Flanking Active TSS	K562	blood
17	chr2:171600200-171601600	Enhancers	Gastric	stomach

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