Variant report

Variant	rs2216134
Chromosome Location	chr2:171641584-171641585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC007405.7.1-1	chr2:171641156-171641631	NONHSAT075422

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10168078	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1065651	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930440	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11675773	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12463871	0.95[ASN][1000 genomes]
rs12464863	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12472397	0.91[ASN][1000 genomes]
rs12692960	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362488	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420378	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420379	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420380	0.91[ASN][1000 genomes]
rs1420381	0.91[ASN][1000 genomes]
rs17694562	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694708	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751035	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751072	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751234	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894920	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1990653	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2111000	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287110	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2287111	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2356234	0.91[ASN][1000 genomes]
rs2883888	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34137349	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34436957	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35127716	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35872782	0.97[ASN][1000 genomes]
rs4411661	0.88[EUR][1000 genomes]
rs4667657	0.91[ASN][1000 genomes]
rs4668308	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4668315	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668316	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693618	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55799517	0.91[ASN][1000 genomes]
rs55804482	0.91[ASN][1000 genomes]
rs55923006	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56024406	0.83[ASN][1000 genomes]
rs56330225	0.91[ASN][1000 genomes]
rs56364811	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56989102	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58919807	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168365	0.87[ASN][1000 genomes]
rs62168366	0.87[ASN][1000 genomes]
rs62168367	0.89[ASN][1000 genomes]
rs62168369	0.91[ASN][1000 genomes]
rs62168370	0.91[ASN][1000 genomes]
rs62168371	0.91[ASN][1000 genomes]
rs62168373	0.95[ASN][1000 genomes]
rs62168376	0.95[ASN][1000 genomes]
rs62168396	0.98[ASN][1000 genomes]
rs62168397	0.98[ASN][1000 genomes]
rs62168399	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168400	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168401	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168405	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168409	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168446	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168447	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168448	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62169547	0.83[ASN][1000 genomes]
rs62169548	0.83[ASN][1000 genomes]
rs6712113	0.91[ASN][1000 genomes]
rs6742220	0.91[ASN][1000 genomes]
rs6755814	0.84[ASN][1000 genomes]
rs6759584	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72887356	0.91[ASN][1000 genomes]
rs72887361	0.95[ASN][1000 genomes]
rs72887372	0.98[ASN][1000 genomes]
rs7568115	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7600585	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171629600-171658800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:171630200-171641800	Weak transcription	K562	blood
3	chr2:171635200-171649800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:171635600-171646800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:171635800-171643600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:171640600-171643600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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