Variant report

Variant	rs62168396
Chromosome Location	chr2:171624555-171624556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171603347..171605855-chr2:171623279..171625744,2	K562	blood:
2	chr2:171597354..171598921-chr2:171623735..171625957,2	K562	blood:
3	chr2:171599327..171601444-chr2:171623384..171626338,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10168078	0.94[ASN][1000 genomes]
rs1065651	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10930440	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1110002	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1134626	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11675773	0.98[ASN][1000 genomes]
rs12463871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12464863	0.94[ASN][1000 genomes]
rs12469431	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12472397	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12692960	0.98[ASN][1000 genomes]
rs1362488	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1420378	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1420379	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1420380	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1420381	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17694562	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17694708	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17751035	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17751072	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17751234	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1861464	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1894920	0.94[ASN][1000 genomes]
rs1990653	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2111000	0.98[ASN][1000 genomes]
rs2216134	0.98[ASN][1000 genomes]
rs2287110	0.91[ASN][1000 genomes]
rs2287111	0.93[ASN][1000 genomes]
rs2356234	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2883888	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34137349	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34436957	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35127716	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35872782	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4667657	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4668308	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4668315	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4668316	0.98[ASN][1000 genomes]
rs55693618	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55799517	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55804482	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55923006	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56024406	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56330225	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56364811	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56989102	0.82[AMR][1000 genomes]
rs58919807	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61246559	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62168365	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62168366	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62168367	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62168369	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62168370	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62168371	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62168373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62168376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62168397	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168399	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168400	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168401	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168405	0.98[ASN][1000 genomes]
rs62168409	0.98[ASN][1000 genomes]
rs62168446	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62168447	0.94[ASN][1000 genomes]
rs62168448	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62169546	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62169547	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62169548	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6712113	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6742220	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6755814	0.82[ASN][1000 genomes]
rs6759584	0.98[ASN][1000 genomes]
rs72885487	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72887356	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72887361	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72887372	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7568115	0.94[ASN][1000 genomes]
rs7600585	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171613200-171626800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:171618600-171626600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:171619600-171626800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:171621200-171626600	Weak transcription	Liver	Liver
5	chr2:171621800-171626200	Weak transcription	Fetal Intestine Small	intestine
6	chr2:171622000-171626600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:171622000-171626600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:171622200-171626000	Weak transcription	GM12878-XiMat	blood
9	chr2:171622200-171626000	Weak transcription	K562	blood
10	chr2:171622200-171626200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:171622400-171626400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr2:171622400-171626600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:171623000-171626600	Weak transcription	Fetal Lung	lung
14	chr2:171623400-171624600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:171623600-171626000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:171623600-171626000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr2:171623600-171626200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:171623600-171626200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr2:171623600-171626200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr2:171623600-171626200	Weak transcription	Primary T cells from cord blood	blood
21	chr2:171623600-171626200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr2:171623600-171626400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr2:171623600-171626400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr2:171623600-171626600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr2:171623600-171626600	Weak transcription	Stomach Mucosa	stomach
26	chr2:171623800-171624800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr2:171623800-171626000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr2:171623800-171626000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr2:171623800-171626000	Weak transcription	HepG2	liver

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