Variant report

Variant	rs12469431
Chromosome Location	chr2:171585872-171585873
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171570567..171573325-chr2:171583355..171586248,3	K562	blood:
2	chr2:171570567..171573325-chr2:171583355..171586248,2	K562	blood:
3	chr2:171571631..171574275-chr2:171584556..171586057,2	MCF-7	breast:
4	chr2:171585442..171587895-chr2:171592856..171594738,2	K562	blood:

Variant related genes	Relation type
ENSG00000204335	Chromatin interaction
ENSG00000222033	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1065651	0.82[AMR][1000 genomes]
rs1110002	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1134626	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12463871	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12472397	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1362488	0.82[AMR][1000 genomes]
rs1420378	0.81[AMR][1000 genomes]
rs1420379	0.81[AMR][1000 genomes]
rs1420380	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1420381	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17694562	0.82[AMR][1000 genomes]
rs17694708	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17751035	0.82[AMR][1000 genomes]
rs17751072	0.82[AMR][1000 genomes]
rs17751234	0.82[AMR][1000 genomes]
rs1861464	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1990653	0.82[AMR][1000 genomes]
rs2356234	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34436957	0.81[AMR][1000 genomes]
rs35127716	0.88[AMR][1000 genomes]
rs35872782	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4667657	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4668308	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4668315	0.82[AMR][1000 genomes]
rs55693618	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55799517	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55804482	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55923006	0.84[AMR][1000 genomes]
rs56024406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56330225	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56364811	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs58919807	0.81[AMR][1000 genomes]
rs61246559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168365	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62168366	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62168367	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62168369	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62168370	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62168371	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62168373	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62168376	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62168396	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62168397	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62168399	0.82[AMR][1000 genomes]
rs62168400	0.82[AMR][1000 genomes]
rs62168401	0.82[AMR][1000 genomes]
rs62168446	0.88[AMR][1000 genomes]
rs62168448	0.88[AMR][1000 genomes]
rs62169546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62169547	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62169548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6712113	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6742220	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72885464	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72885487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72887356	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72887361	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72887372	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7600585	0.82[AMR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171577800-171586200	Weak transcription	Fetal Intestine Large	intestine
3	chr2:171580200-171589600	Weak transcription	Fetal Intestine Small	intestine
4	chr2:171580800-171590400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:171584400-171586000	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:171584800-171586400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:171584800-171590600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:171585600-171586000	Weak transcription	Aorta	Aorta
9	chr2:171585600-171586800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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