Variant report

Variant	rs62168367
Chromosome Location	chr2:171596625-171596626
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171595899..171597682-chr2:171601375..171604248,2	MCF-7	breast:
2	chr2:171594157..171598805-chr2:171599016..171605066,9	K562	blood:
3	chr2:171572262..171574374-chr2:171596023..171597938,2	K562	blood:

Variant related genes	Relation type
ENSG00000204335	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10168078	0.85[ASN][1000 genomes]
rs1065651	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10930440	0.89[ASN][1000 genomes]
rs1110002	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1134626	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11675773	0.89[ASN][1000 genomes]
rs12463871	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12464863	0.85[ASN][1000 genomes]
rs12469431	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12472397	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12692960	0.89[ASN][1000 genomes]
rs1362488	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1420378	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1420379	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1420380	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1420381	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17694562	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17694708	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17751035	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17751072	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17751234	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1861464	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1894920	0.85[ASN][1000 genomes]
rs1990653	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2111000	0.89[ASN][1000 genomes]
rs2216134	0.89[ASN][1000 genomes]
rs2287110	0.83[ASN][1000 genomes]
rs2287111	0.84[ASN][1000 genomes]
rs2356234	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34436957	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35127716	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35872782	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4667657	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4668308	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4668315	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4668316	0.89[ASN][1000 genomes]
rs55693618	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55799517	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55804482	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55923006	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56024406	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56330225	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56364811	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58919807	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61246559	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62168365	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168366	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168369	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168370	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168371	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168373	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62168376	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62168396	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62168397	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62168399	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62168400	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62168401	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62168405	0.89[ASN][1000 genomes]
rs62168409	0.89[ASN][1000 genomes]
rs62168446	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62168447	0.85[ASN][1000 genomes]
rs62168448	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62169546	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62169547	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62169548	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6712113	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6742220	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6759584	0.89[ASN][1000 genomes]
rs72885487	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72887356	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72887361	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72887372	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7568115	0.85[ASN][1000 genomes]
rs7600585	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171593200-171598000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:171593600-171600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:171594000-171597200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:171594000-171600200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:171594200-171596800	Enhancers	Stomach Mucosa	stomach
7	chr2:171594200-171597600	Enhancers	HMEC	breast
8	chr2:171594400-171597400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:171595000-171597800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:171595200-171596800	Enhancers	Fetal Intestine Large	intestine
11	chr2:171595200-171600200	Weak transcription	Gastric	stomach
12	chr2:171596000-171598000	Enhancers	NHEK	skin
13	chr2:171596200-171600200	Enhancers	K562	blood
14	chr2:171596200-171601200	Weak transcription	HSMMtube	muscle
15	chr2:171596400-171599200	Weak transcription	NH-A	brain
16	chr2:171596600-171598400	Weak transcription	Fetal Intestine Small	intestine

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