Variant report

Variant	rs2356234
Chromosome Location	chr2:171609127-171609128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10168078	0.93[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs1065651	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10930440	0.93[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1110002	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1134626	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11675773	0.91[ASN][1000 genomes]
rs12463871	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12464863	0.93[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs12469431	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12472397	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12692960	0.91[ASN][1000 genomes]
rs1362488	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1420378	0.93[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1420379	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1420380	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694562	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17694708	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17751035	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17751072	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17751234	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1861464	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1894920	0.86[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs1978340	0.85[JPT][hapmap]
rs1990653	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2111000	0.91[ASN][1000 genomes]
rs2216134	0.91[ASN][1000 genomes]
rs2287110	0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs2287111	0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs2883888	0.82[AMR][1000 genomes]
rs34137349	0.81[AMR][1000 genomes]
rs34436957	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35127716	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35872782	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4667657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668308	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668315	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4668316	0.91[ASN][1000 genomes]
rs55693618	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55799517	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55804482	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923006	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56024406	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56330225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364811	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56989102	0.81[AMR][1000 genomes]
rs58919807	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61246559	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62168365	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168366	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62168367	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62168369	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168371	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62168373	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62168376	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62168396	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62168397	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62168399	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168400	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168401	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62168405	0.91[ASN][1000 genomes]
rs62168409	0.91[ASN][1000 genomes]
rs62168446	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62168447	0.87[ASN][1000 genomes]
rs62168448	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62169546	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62169547	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62169548	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6712113	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755814	0.80[CHB][hapmap];0.92[JPT][hapmap]
rs6759584	0.93[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs72885487	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72887356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72887361	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72887372	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7568115	0.93[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs7600585	0.93[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963746	chr2:171602620-171609432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links