Variant report

Variant	rs35943915
Chromosome Location	chr10:89656078-89656079
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89638682..89641996-chr10:89653428..89657390,3	K562	blood:
2	chr10:89646944..89651726-chr10:89652897..89657139,4	MCF-7	breast:
3	chr10:89621045..89623534-chr10:89654596..89657303,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs34622854	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34970615	1.00[AMR][1000 genomes]
rs35613078	1.00[AMR][1000 genomes]
rs35893881	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45624631	1.00[AMR][1000 genomes]
rs56885989	1.00[AMR][1000 genomes]
rs56939055	1.00[AMR][1000 genomes]
rs57337081	1.00[AMR][1000 genomes]
rs57435456	1.00[AMR][1000 genomes]
rs58109243	1.00[AMR][1000 genomes]
rs58498189	1.00[AMR][1000 genomes]
rs59084653	1.00[AMR][1000 genomes]
rs59795104	1.00[AMR][1000 genomes]
rs61089733	1.00[AMR][1000 genomes]
rs61167277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61222758	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61737034	1.00[AMR][1000 genomes]
rs73336615	1.00[AMR][1000 genomes]
rs73336625	1.00[AMR][1000 genomes]
rs73346506	1.00[AMR][1000 genomes]
rs73352851	1.00[AMR][1000 genomes]
rs73354909	1.00[AMR][1000 genomes]
rs73354928	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354938	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354948	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354953	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354964	1.00[AMR][1000 genomes]
rs7914388	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1050406	chr10:89632138-89657906	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834539	chr10:89652878-89657150	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1836451	chr10:89652878-89657150	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1839072	chr10:89652878-89657150	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:89631000-89663400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:89633000-89663400	Weak transcription	Pancreas	Pancrea
5	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
6	chr10:89636200-89661800	Weak transcription	Brain Anterior Caudate	brain
7	chr10:89639000-89656200	Weak transcription	Stomach Mucosa	stomach
8	chr10:89641600-89663000	Weak transcription	Esophagus	oesophagus
9	chr10:89642600-89657000	Strong transcription	Dnd41	blood
10	chr10:89646600-89663800	Weak transcription	Fetal Kidney	kidney
11	chr10:89646800-89657400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:89646800-89659400	Strong transcription	Fetal Thymus	thymus
13	chr10:89646800-89663000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:89647000-89667400	Weak transcription	HMEC	breast
15	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:89647200-89657400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:89647200-89662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:89647200-89675400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:89647600-89656600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:89647600-89657000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:89647600-89671800	Weak transcription	HUVEC	blood vessel
22	chr10:89647800-89657000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:89647800-89662000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:89647800-89665600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:89647800-89671000	Weak transcription	A549	lung
26	chr10:89648000-89656800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:89648000-89656800	Weak transcription	Fetal Intestine Small	intestine
28	chr10:89648000-89656800	Weak transcription	Left Ventricle	heart
29	chr10:89648000-89657800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:89648000-89657800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:89648000-89663000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:89648000-89663000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:89648000-89663000	Weak transcription	Lung	lung
34	chr10:89648000-89663200	Weak transcription	Gastric	stomach
35	chr10:89648000-89663200	Weak transcription	Spleen	Spleen
36	chr10:89648000-89664200	Weak transcription	NH-A	brain
37	chr10:89648000-89683000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:89648200-89657200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:89648200-89662800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:89648200-89663000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:89648200-89663200	Weak transcription	Colonic Mucosa	Colon
42	chr10:89648200-89674400	Weak transcription	Right Ventricle	heart
43	chr10:89648400-89656200	Weak transcription	Osteobl	bone
44	chr10:89648400-89657000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:89648400-89657800	Weak transcription	Adipose Nuclei	Adipose
46	chr10:89648400-89657800	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:89648400-89662000	Weak transcription	Thymus	Thymus
48	chr10:89648400-89662800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:89648400-89662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:89648400-89663200	Weak transcription	Rectal Mucosa Donor 31	rectum

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