Variant report

Variant	rs56939055
Chromosome Location	chr10:89512818-89512819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89511205..89513054-chr10:89516140..89517793,2	MCF-7	breast:

rs_ID	r²[population]
rs34622854	1.00[AMR][1000 genomes]
rs34970615	1.00[AMR][1000 genomes]
rs35613078	1.00[AMR][1000 genomes]
rs35893881	1.00[AMR][1000 genomes]
rs35943915	1.00[AMR][1000 genomes]
rs45624631	1.00[AMR][1000 genomes]
rs56885989	1.00[AMR][1000 genomes]
rs57337081	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57435456	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59084653	1.00[AMR][1000 genomes]
rs59795104	1.00[AMR][1000 genomes]
rs61167277	1.00[AMR][1000 genomes]
rs61222758	1.00[AMR][1000 genomes]
rs61737034	1.00[AMR][1000 genomes]
rs73352851	1.00[AMR][1000 genomes]
rs73354909	1.00[AMR][1000 genomes]
rs73354928	1.00[AMR][1000 genomes]
rs73354938	1.00[AMR][1000 genomes]
rs73354948	1.00[AMR][1000 genomes]
rs73354953	1.00[AMR][1000 genomes]
rs7914388	1.00[AMR][1000 genomes]

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:89473000-89577200	Weak transcription	Gastric	stomach
3	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
4	chr10:89495000-89514000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:89495000-89541400	Weak transcription	Right Ventricle	heart
6	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:89495200-89514000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:89495200-89515600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:89495200-89530600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:89495200-89542600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:89495200-89544600	Weak transcription	Brain Substantia Nigra	brain
12	chr10:89495200-89559200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
14	chr10:89495400-89525600	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:89495600-89513000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:89498200-89519400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:89498200-89541400	Weak transcription	Aorta	Aorta
18	chr10:89498800-89536200	Weak transcription	Small Intestine	intestine
19	chr10:89500600-89513000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:89503200-89521200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:89503400-89523200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:89503400-89528400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:89503600-89513600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:89503600-89515600	Weak transcription	HepG2	liver
25	chr10:89504200-89551800	Weak transcription	Psoas Muscle	Psoas
26	chr10:89505000-89520000	Weak transcription	Fetal Stomach	stomach
27	chr10:89505600-89514000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:89506800-89513600	Weak transcription	Adipose Nuclei	Adipose
29	chr10:89506800-89513800	Weak transcription	Ovary	ovary
30	chr10:89506800-89514000	Weak transcription	Left Ventricle	heart
31	chr10:89506800-89520000	Weak transcription	Fetal Intestine Small	intestine
32	chr10:89507000-89513600	Weak transcription	Brain Anterior Caudate	brain
33	chr10:89507000-89513600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr10:89507000-89515400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:89507000-89517600	Weak transcription	Brain Angular Gyrus	brain
36	chr10:89507000-89525600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:89507000-89557600	Weak transcription	Lung	lung
38	chr10:89507200-89513800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:89507400-89514000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:89508600-89513800	Weak transcription	Fetal Lung	lung
41	chr10:89509000-89527000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:89509200-89514000	Weak transcription	Primary T cells from cord blood	blood
43	chr10:89510000-89513000	Weak transcription	NH-A	brain
44	chr10:89510000-89513200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:89510000-89514000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:89510000-89514000	Weak transcription	HSMMtube	muscle
47	chr10:89510000-89515400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:89510000-89515800	Weak transcription	K562	blood
49	chr10:89510200-89513000	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr10:89510200-89513600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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