Variant report

Variant	rs73354928
Chromosome Location	chr10:89674701-89674702
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620299..89623441-chr10:89672450..89675807,5	MCF-7	breast:
2	chr10:89673644..89678140-chr10:89679296..89683460,5	K562	blood:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs34622854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34970615	1.00[AMR][1000 genomes]
rs35613078	1.00[AMR][1000 genomes]
rs35893881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35943915	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45624631	1.00[AMR][1000 genomes]
rs56885989	1.00[AMR][1000 genomes]
rs56939055	1.00[AMR][1000 genomes]
rs57337081	1.00[AMR][1000 genomes]
rs57435456	1.00[AMR][1000 genomes]
rs58109243	1.00[AMR][1000 genomes]
rs58498189	1.00[AMR][1000 genomes]
rs59084653	1.00[AMR][1000 genomes]
rs59795104	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61089733	1.00[AMR][1000 genomes]
rs61167277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61222758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61737034	1.00[AMR][1000 genomes]
rs73336615	1.00[AMR][1000 genomes]
rs73336625	1.00[AMR][1000 genomes]
rs73346506	1.00[AMR][1000 genomes]
rs73352851	1.00[AMR][1000 genomes]
rs73354909	1.00[AMR][1000 genomes]
rs73354938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354964	1.00[AMR][1000 genomes]
rs7914388	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1035154	chr10:89657150-89676485	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
2	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:89647200-89675400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:89648000-89683000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:89653200-89675200	Weak transcription	NHLF	lung
6	chr10:89656000-89675000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:89656600-89675800	Weak transcription	Osteobl	bone
8	chr10:89658400-89676400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:89663400-89675200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:89663400-89675200	Weak transcription	Gastric	stomach
11	chr10:89663600-89675200	Weak transcription	Pancreas	Pancrea
12	chr10:89663600-89686400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:89663600-89687400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:89663800-89675200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
16	chr10:89664000-89674800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:89664000-89675000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:89664000-89675200	Strong transcription	Fetal Thymus	thymus
19	chr10:89664000-89675200	Weak transcription	Left Ventricle	heart
20	chr10:89664000-89675200	Weak transcription	Lung	lung
21	chr10:89664000-89681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:89664200-89675200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:89664600-89675200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:89664800-89675000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:89664800-89675000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:89664800-89675200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:89664800-89675200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:89664800-89676400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:89665200-89675200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:89665200-89675400	Weak transcription	NH-A	brain
31	chr10:89665600-89675200	Weak transcription	Esophagus	oesophagus
32	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
33	chr10:89666600-89675600	ZNF genes & repeats	GM12878-XiMat	blood
34	chr10:89666600-89682800	Weak transcription	Placenta	Placenta
35	chr10:89667000-89675400	Weak transcription	Fetal Heart	heart
36	chr10:89668000-89675200	Weak transcription	HMEC	breast
37	chr10:89668400-89675200	Weak transcription	Psoas Muscle	Psoas
38	chr10:89670400-89674800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
39	chr10:89670400-89675000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:89671600-89675400	ZNF genes & repeats	Fetal Intestine Large	intestine
41	chr10:89671600-89675400	ZNF genes & repeats	Fetal Muscle Leg	muscle
42	chr10:89671600-89675600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
43	chr10:89671600-89682800	Weak transcription	Spleen	Spleen
44	chr10:89672000-89681600	Weak transcription	Aorta	Aorta
45	chr10:89672200-89674800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
46	chr10:89672400-89674800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:89672600-89675200	Strong transcription	Thymus	Thymus
48	chr10:89673000-89675200	Strong transcription	Hela-S3	cervix
49	chr10:89673000-89675200	Weak transcription	NHEK	skin
50	chr10:89673200-89675200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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