Variant report

Variant	rs57435456
Chromosome Location	chr10:89551895-89551896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs34622854	1.00[AMR][1000 genomes]
rs34970615	1.00[AMR][1000 genomes]
rs35613078	1.00[AMR][1000 genomes]
rs35893881	1.00[AMR][1000 genomes]
rs35943915	1.00[AMR][1000 genomes]
rs45624631	1.00[AMR][1000 genomes]
rs56885989	1.00[AMR][1000 genomes]
rs56939055	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57337081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59084653	1.00[AMR][1000 genomes]
rs59795104	1.00[AMR][1000 genomes]
rs61167277	1.00[AMR][1000 genomes]
rs61222758	1.00[AMR][1000 genomes]
rs61737034	1.00[AMR][1000 genomes]
rs73352851	1.00[AMR][1000 genomes]
rs73354909	1.00[AMR][1000 genomes]
rs73354928	1.00[AMR][1000 genomes]
rs73354938	1.00[AMR][1000 genomes]
rs73354948	1.00[AMR][1000 genomes]
rs73354953	1.00[AMR][1000 genomes]
rs73354964	1.00[AMR][1000 genomes]
rs7914388	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89473000-89577200	Weak transcription	Gastric	stomach
2	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:89495200-89559200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
5	chr10:89507000-89557600	Weak transcription	Lung	lung
6	chr10:89510200-89553800	Weak transcription	Esophagus	oesophagus
7	chr10:89511000-89576800	Weak transcription	Colonic Mucosa	Colon
8	chr10:89512800-89560400	Weak transcription	Fetal Brain Male	brain
9	chr10:89513400-89577000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:89516400-89557800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:89518200-89556600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:89518400-89559000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:89520400-89556400	Weak transcription	Brain Germinal Matrix	brain
14	chr10:89520600-89575600	Weak transcription	Stomach Mucosa	stomach
15	chr10:89523200-89553000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:89523400-89562800	Weak transcription	K562	blood
17	chr10:89523800-89562000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:89524600-89560400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:89527400-89553600	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:89527400-89575000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:89527600-89554000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:89527600-89554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:89530800-89575800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:89536200-89557800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:89536200-89574600	Weak transcription	Brain Anterior Caudate	brain
26	chr10:89537000-89560400	Weak transcription	Small Intestine	intestine
27	chr10:89537000-89576400	Weak transcription	HSMMtube	muscle
28	chr10:89538000-89552800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:89538200-89558600	Strong transcription	Hela-S3	cervix
30	chr10:89538800-89556600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:89540000-89556600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:89540200-89560000	Weak transcription	Fetal Kidney	kidney
33	chr10:89540200-89562800	Weak transcription	Fetal Heart	heart
34	chr10:89540800-89560000	Weak transcription	Fetal Brain Female	brain
35	chr10:89540800-89563000	Weak transcription	Ovary	ovary
36	chr10:89541800-89575000	Weak transcription	Right Ventricle	heart
37	chr10:89542000-89571200	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:89542800-89556200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:89543000-89556600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr10:89543000-89562000	Weak transcription	Thymus	Thymus
41	chr10:89543000-89571400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:89543200-89554200	Weak transcription	Pancreas	Pancrea
43	chr10:89543200-89556200	Weak transcription	Fetal Stomach	stomach
44	chr10:89543200-89557600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:89543200-89559000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr10:89543200-89563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:89543200-89572200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:89543400-89577200	Weak transcription	Aorta	Aorta
49	chr10:89545600-89553000	Strong transcription	Placenta	Placenta
50	chr10:89546000-89552800	Strong transcription	GM12878-XiMat	blood

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