Variant report

Variant	rs34970615
Chromosome Location	chr10:89635871-89635872
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr10:89635822-89635879	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:89622936..89626124-chr10:89632043..89636497,5	MCF-7	breast:
2	chr10:89630597..89633078-chr10:89635123..89637172,2	MCF-7	breast:
3	chr10:89628331..89631690-chr10:89632886..89636887,5	MCF-7	breast:
4	chr10:89621343..89626061-chr10:89634894..89638873,7	K562	blood:
5	chr10:89632106..89634679-chr10:89635218..89637761,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000224745	TF binding region
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs34622854	1.00[AMR][1000 genomes]
rs35613078	1.00[AMR][1000 genomes]
rs35893881	1.00[AMR][1000 genomes]
rs35943915	1.00[AMR][1000 genomes]
rs45624631	1.00[AMR][1000 genomes]
rs56885989	1.00[AMR][1000 genomes]
rs56939055	1.00[AMR][1000 genomes]
rs57337081	1.00[AMR][1000 genomes]
rs57435456	1.00[AMR][1000 genomes]
rs58109243	1.00[AMR][1000 genomes]
rs58498189	1.00[AMR][1000 genomes]
rs59084653	1.00[AMR][1000 genomes]
rs59795104	1.00[AMR][1000 genomes]
rs61089733	1.00[AMR][1000 genomes]
rs61167277	1.00[AMR][1000 genomes]
rs61222758	1.00[AMR][1000 genomes]
rs61737034	1.00[AMR][1000 genomes]
rs73336615	1.00[AMR][1000 genomes]
rs73336625	1.00[AMR][1000 genomes]
rs73346506	1.00[AMR][1000 genomes]
rs73352851	1.00[AMR][1000 genomes]
rs73354909	1.00[AMR][1000 genomes]
rs73354928	1.00[AMR][1000 genomes]
rs73354938	1.00[AMR][1000 genomes]
rs73354948	1.00[AMR][1000 genomes]
rs73354953	1.00[AMR][1000 genomes]
rs73354964	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7914388	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044700	chr10:89615125-89641293	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv1793643	chr10:89625582-89645473	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1035278	chr10:89629273-89641293	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv551832	chr10:89630424-89650759	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1050406	chr10:89632138-89657906	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv275087	chr10:89632510-89642848	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89624400-89646400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:89627200-89645800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:89627400-89638200	Weak transcription	Placenta	Placenta
5	chr10:89627600-89645600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:89628200-89646200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:89628200-89646600	Weak transcription	Colonic Mucosa	Colon
8	chr10:89628400-89637800	Weak transcription	Fetal Intestine Small	intestine
9	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:89628600-89636400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:89628600-89638200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:89628600-89645800	Weak transcription	HSMMtube	muscle
13	chr10:89628800-89638400	Weak transcription	K562	blood
14	chr10:89628800-89645600	Weak transcription	Fetal Kidney	kidney
15	chr10:89628800-89647000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:89629000-89637600	Weak transcription	HMEC	breast
17	chr10:89629400-89637600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:89629400-89646200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:89629800-89637400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:89629800-89637600	Weak transcription	NHEK	skin
21	chr10:89629800-89644600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:89630000-89638200	Weak transcription	Stomach Mucosa	stomach
23	chr10:89630000-89645600	Weak transcription	NH-A	brain
24	chr10:89630200-89637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:89630400-89636600	Enhancers	Primary B cells from cord blood	blood
26	chr10:89631000-89638400	Weak transcription	Fetal Heart	heart
27	chr10:89631000-89645600	Weak transcription	Fetal Brain Female	brain
28	chr10:89631000-89645800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:89631000-89647400	Weak transcription	Fetal Brain Male	brain
30	chr10:89631000-89663400	Weak transcription	Brain Angular Gyrus	brain
31	chr10:89631200-89638200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:89631600-89637800	Weak transcription	Fetal Intestine Large	intestine
33	chr10:89631600-89645400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:89631600-89647400	Weak transcription	Gastric	stomach
35	chr10:89631600-89647400	Weak transcription	Psoas Muscle	Psoas
36	chr10:89632000-89636600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:89632200-89636800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:89632200-89638200	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr10:89632800-89638200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:89633000-89636000	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:89633000-89636600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:89633000-89642200	Weak transcription	Colon Smooth Muscle	Colon
43	chr10:89633000-89663400	Weak transcription	Pancreas	Pancrea
44	chr10:89633200-89637200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:89633400-89636800	Enhancers	Primary hematopoietic stem cells	blood
46	chr10:89633400-89637800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:89633400-89644600	Weak transcription	Thymus	Thymus
48	chr10:89633400-89645200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:89633400-89645600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr10:89633400-89645600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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