Variant report

Variant	rs73352851
Chromosome Location	chr10:89525933-89525934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89517545..89520078-chr10:89524489..89526607,2	MCF-7	breast:
2	chr10:89522883..89524581-chr10:89525481..89528269,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs34622854	1.00[AMR][1000 genomes]
rs34970615	1.00[AMR][1000 genomes]
rs35613078	1.00[AMR][1000 genomes]
rs35893881	1.00[AMR][1000 genomes]
rs35943915	1.00[AMR][1000 genomes]
rs45624631	1.00[AMR][1000 genomes]
rs56885989	1.00[AMR][1000 genomes]
rs56939055	1.00[AMR][1000 genomes]
rs57337081	1.00[AMR][1000 genomes]
rs57435456	1.00[AMR][1000 genomes]
rs59084653	1.00[AMR][1000 genomes]
rs59795104	1.00[AMR][1000 genomes]
rs61167277	1.00[AMR][1000 genomes]
rs61222758	1.00[AMR][1000 genomes]
rs61737034	1.00[AMR][1000 genomes]
rs73354909	1.00[AMR][1000 genomes]
rs73354928	1.00[AMR][1000 genomes]
rs73354938	1.00[AMR][1000 genomes]
rs73354948	1.00[AMR][1000 genomes]
rs73354953	1.00[AMR][1000 genomes]
rs7914388	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:89473000-89577200	Weak transcription	Gastric	stomach
3	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
4	chr10:89495000-89541400	Weak transcription	Right Ventricle	heart
5	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:89495200-89530600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:89495200-89542600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:89495200-89544600	Weak transcription	Brain Substantia Nigra	brain
9	chr10:89495200-89559200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
11	chr10:89498200-89541400	Weak transcription	Aorta	Aorta
12	chr10:89498800-89536200	Weak transcription	Small Intestine	intestine
13	chr10:89503400-89528400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:89504200-89551800	Weak transcription	Psoas Muscle	Psoas
15	chr10:89507000-89557600	Weak transcription	Lung	lung
16	chr10:89509000-89527000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:89510200-89553800	Weak transcription	Esophagus	oesophagus
18	chr10:89511000-89576800	Weak transcription	Colonic Mucosa	Colon
19	chr10:89511200-89526800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:89512800-89560400	Weak transcription	Fetal Brain Male	brain
21	chr10:89513400-89577000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr10:89514600-89526000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:89514600-89528600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:89514600-89534600	Weak transcription	Ovary	ovary
25	chr10:89514600-89539800	Weak transcription	Fetal Kidney	kidney
26	chr10:89516000-89526800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:89516000-89541200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:89516200-89535400	Weak transcription	Brain Anterior Caudate	brain
29	chr10:89516400-89528400	Weak transcription	Adipose Nuclei	Adipose
30	chr10:89516400-89541400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:89516400-89557800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:89518200-89556600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:89518400-89559000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr10:89518600-89527000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:89519000-89530800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:89520200-89542800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr10:89520400-89535600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:89520400-89556400	Weak transcription	Brain Germinal Matrix	brain
39	chr10:89520600-89575600	Weak transcription	Stomach Mucosa	stomach
40	chr10:89520800-89529000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:89521200-89526800	Weak transcription	NH-A	brain
42	chr10:89521800-89540400	Weak transcription	Thymus	Thymus
43	chr10:89522200-89526800	Weak transcription	NHDF-Ad	bronchial
44	chr10:89522200-89535200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr10:89522400-89527000	Weak transcription	HMEC	breast
46	chr10:89522400-89528200	Weak transcription	NHEK	skin
47	chr10:89522400-89535400	Weak transcription	NHLF	lung
48	chr10:89522600-89530400	Strong transcription	GM12878-XiMat	blood
49	chr10:89522600-89530800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:89523000-89528400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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