Variant report

Variant	rs73354948
Chromosome Location	chr10:89702979-89702980
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:89702634-89703200	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr10:89702934-89702982	K562	blood:	n/a	n/a
3	E2F4	chr10:89702731-89703417	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr10:89702683-89703254	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr10:89702779-89703086	GM12892	blood:	n/a	n/a
6	FOS	chr10:89702695-89703254	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr10:89702723-89703275	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89683604..89685198-chr10:89700673..89703491,2	K562	blood:
2	chr10:89685840..89688439-chr10:89700788..89703474,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213613	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs34622854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34970615	1.00[AMR][1000 genomes]
rs35613078	1.00[AMR][1000 genomes]
rs35893881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35943915	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45624631	1.00[AMR][1000 genomes]
rs56885989	1.00[AMR][1000 genomes]
rs56939055	1.00[AMR][1000 genomes]
rs57337081	1.00[AMR][1000 genomes]
rs57435456	1.00[AMR][1000 genomes]
rs58109243	1.00[AMR][1000 genomes]
rs58498189	1.00[AMR][1000 genomes]
rs59084653	1.00[AMR][1000 genomes]
rs59795104	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61089733	1.00[AMR][1000 genomes]
rs61167277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61222758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61737034	1.00[AMR][1000 genomes]
rs73336615	1.00[AMR][1000 genomes]
rs73336625	1.00[AMR][1000 genomes]
rs73346506	1.00[AMR][1000 genomes]
rs73352851	1.00[AMR][1000 genomes]
rs73354909	1.00[AMR][1000 genomes]
rs73354928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354964	1.00[AMR][1000 genomes]
rs7914388	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
3	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
4	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:89674200-89711000	Weak transcription	HepG2	liver
6	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
7	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:89675600-89705000	Weak transcription	Fetal Stomach	stomach
9	chr10:89675600-89705200	Weak transcription	Esophagus	oesophagus
10	chr10:89682000-89705200	Weak transcription	Fetal Intestine Small	intestine
11	chr10:89682000-89705200	Weak transcription	Left Ventricle	heart
12	chr10:89682000-89705600	Weak transcription	Lung	lung
13	chr10:89682400-89705200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:89683200-89705000	Weak transcription	Thymus	Thymus
15	chr10:89683200-89715200	Weak transcription	Pancreas	Pancrea
16	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
18	chr10:89684000-89707400	Strong transcription	Dnd41	blood
19	chr10:89684000-89725600	Weak transcription	Gastric	stomach
20	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
21	chr10:89685800-89712400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:89686600-89711200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:89686800-89708400	Weak transcription	Aorta	Aorta
24	chr10:89686800-89710400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:89687000-89712200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:89687200-89705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:89687200-89705800	Weak transcription	Small Intestine	intestine
28	chr10:89687400-89715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:89687600-89711400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
31	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:89691200-89708400	Strong transcription	Fetal Thymus	thymus
33	chr10:89691400-89706400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr10:89691600-89705000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:89691600-89705000	Weak transcription	HSMMtube	muscle
36	chr10:89691600-89707200	Strong transcription	Primary B cells from cord blood	blood
37	chr10:89691600-89711400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr10:89692200-89706000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:89692200-89712000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:89692200-89724800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:89692400-89705200	Weak transcription	NHEK	skin
42	chr10:89692600-89704400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:89694800-89704400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr10:89694800-89705200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:89695600-89711400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr10:89695800-89705200	Weak transcription	HMEC	breast
47	chr10:89695800-89712200	Weak transcription	Brain Anterior Caudate	brain
48	chr10:89695800-89712200	Weak transcription	Colon Smooth Muscle	Colon
49	chr10:89696000-89704000	Weak transcription	Brain Hippocampus Middle	brain
50	chr10:89696000-89705000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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