The 2.0 version of rSNPBase

Variant report

Variant rs3745001
Chromosome Location chr18:43573981-43573982
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:43558800-43608000 Weak transcription Pancreas Pancrea
2 chr18:43560400-43582600 Weak transcription Fetal Intestine Small intestine
3 chr18:43560400-43597600 Weak transcription Left Ventricle heart
4 chr18:43560600-43575600 Weak transcription Ovary ovary
5 chr18:43560600-43591600 Weak transcription Duodenum Mucosa Duodenum
6 chr18:43561000-43576800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr18:43562400-43583200 Weak transcription Lung lung
8 chr18:43562600-43585600 Strong transcription Breast Myoepithelial Primary Cells Breast
9 chr18:43563400-43592000 Weak transcription Psoas Muscle Psoas
10 chr18:43564600-43576000 Weak transcription Primary T killer naive cells fromperipheralblood blood
11 chr18:43564800-43574200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr18:43564800-43576400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr18:43565400-43588800 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr18:43565400-43590800 Weak transcription Colon Smooth Muscle Colon
15 chr18:43565600-43588800 Weak transcription Stomach Smooth Muscle stomach
16 chr18:43566200-43574200 Strong transcription Liver Liver
17 chr18:43566200-43576400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr18:43566200-43577200 Strong transcription Monocytes-CD14+_RO01746 blood
19 chr18:43566400-43577600 Strong transcription Primary hematopoietic stem cells short term culture blood
20 chr18:43567400-43574200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr18:43567800-43578400 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr18:43567800-43588800 Weak transcription NHEK skin
23 chr18:43568000-43574000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
24 chr18:43568000-43576200 Strong transcription Primary neutrophils fromperipheralblood blood
25 chr18:43568000-43583200 Weak transcription Esophagus oesophagus
26 chr18:43568400-43578200 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr18:43568600-43596800 Weak transcription Adipose Nuclei Adipose
28 chr18:43568800-43575600 Weak transcription Primary T cells fromperipheralblood blood
29 chr18:43568800-43588600 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr18:43568800-43607800 Weak transcription Rectal Smooth Muscle rectum
31 chr18:43569200-43577000 Weak transcription Primary T cells from cord blood blood
32 chr18:43569400-43588800 Weak transcription Fetal Stomach stomach
33 chr18:43570000-43577000 Strong transcription Primary monocytes fromperipheralblood blood
34 chr18:43570000-43577800 Weak transcription K562 blood
35 chr18:43570000-43579400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr18:43570000-43583000 Weak transcription Aorta Aorta
37 chr18:43570200-43588800 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr18:43571200-43576200 Weak transcription Primary T helper cells fromperipheralblood blood
39 chr18:43571400-43622000 Weak transcription Gastric stomach
40 chr18:43571600-43576200 Weak transcription Primary T helper cells PMA-I stimulated --
41 chr18:43571600-43576200 Weak transcription Spleen Spleen
42 chr18:43572200-43576200 Weak transcription Primary T helper naive cells fromperipheralblood blood
43 chr18:43572200-43582600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr18:43573200-43574000 Strong transcription Primary hematopoietic stem cells blood
45 chr18:43573200-43574200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
46 chr18:43573200-43574200 Enhancers Hela-S3 cervix
47 chr18:43573400-43574200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr18:43573400-43574200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr18:43573400-43574200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr18:43573400-43574200 Strong transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015