The 2.0 version of rSNPBase

Variant report

Variant rs56663039
Chromosome Location chr18:43565738-43565739
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:43548000-43567000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr18:43554200-43567200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr18:43554400-43566200 Weak transcription Liver Liver
4 chr18:43554600-43566200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr18:43554600-43566800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr18:43554600-43567400 Weak transcription Adipose Nuclei Adipose
7 chr18:43554600-43567800 Weak transcription Primary T cells from cord blood blood
8 chr18:43554600-43567800 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr18:43554600-43568000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr18:43554600-43568800 Weak transcription Primary T helper cells PMA-I stimulated --
11 chr18:43554600-43571400 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr18:43557200-43567200 Weak transcription Osteobl bone
13 chr18:43557200-43573400 Weak transcription NHLF lung
14 chr18:43557400-43567200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr18:43557400-43567200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr18:43557800-43567000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr18:43558400-43569600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr18:43558800-43608000 Weak transcription Pancreas Pancrea
19 chr18:43559600-43567200 Weak transcription HMEC breast
20 chr18:43560400-43566800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr18:43560400-43567800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr18:43560400-43573600 Weak transcription Fetal Intestine Large intestine
23 chr18:43560400-43582600 Weak transcription Fetal Intestine Small intestine
24 chr18:43560400-43597600 Weak transcription Left Ventricle heart
25 chr18:43560600-43567800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr18:43560600-43575600 Weak transcription Ovary ovary
27 chr18:43560600-43591600 Weak transcription Duodenum Mucosa Duodenum
28 chr18:43561000-43569600 Weak transcription K562 blood
29 chr18:43561000-43573400 Weak transcription Placenta Placenta
30 chr18:43561000-43576800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr18:43561200-43567200 Weak transcription Spleen Spleen
32 chr18:43562400-43572400 Weak transcription NHDF-Ad bronchial
33 chr18:43562400-43583200 Weak transcription Lung lung
34 chr18:43562600-43571800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr18:43562600-43585600 Strong transcription Breast Myoepithelial Primary Cells Breast
36 chr18:43563000-43567600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr18:43563400-43592000 Weak transcription Psoas Muscle Psoas
38 chr18:43563800-43567600 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr18:43564000-43567400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr18:43564000-43573400 Weak transcription HSMMtube muscle
41 chr18:43564200-43567200 Weak transcription Primary monocytes fromperipheralblood blood
42 chr18:43564200-43567600 Enhancers Primary neutrophils fromperipheralblood blood
43 chr18:43564400-43567600 Weak transcription Duodenum Smooth Muscle Duodenum
44 chr18:43564600-43568400 Weak transcription Primary T cells fromperipheralblood blood
45 chr18:43564600-43576000 Weak transcription Primary T killer naive cells fromperipheralblood blood
46 chr18:43564800-43574200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr18:43564800-43576400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
48 chr18:43565000-43566800 Weak transcription Primary hematopoietic stem cells blood
49 chr18:43565000-43568200 Weak transcription Aorta Aorta
50 chr18:43565000-43573600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015