The 2.0 version of rSNPBase

Variant report

Variant rs58941766
Chromosome Location chr18:43567534-43567535
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:43554600-43567800 Weak transcription Primary T cells from cord blood blood
2 chr18:43554600-43567800 Weak transcription Primary T helper cells fromperipheralblood blood
3 chr18:43554600-43568000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr18:43554600-43568800 Weak transcription Primary T helper cells PMA-I stimulated --
5 chr18:43554600-43571400 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr18:43557200-43573400 Weak transcription NHLF lung
7 chr18:43558400-43569600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr18:43558800-43608000 Weak transcription Pancreas Pancrea
9 chr18:43560400-43567800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr18:43560400-43573600 Weak transcription Fetal Intestine Large intestine
11 chr18:43560400-43582600 Weak transcription Fetal Intestine Small intestine
12 chr18:43560400-43597600 Weak transcription Left Ventricle heart
13 chr18:43560600-43567800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr18:43560600-43575600 Weak transcription Ovary ovary
15 chr18:43560600-43591600 Weak transcription Duodenum Mucosa Duodenum
16 chr18:43561000-43569600 Weak transcription K562 blood
17 chr18:43561000-43573400 Weak transcription Placenta Placenta
18 chr18:43561000-43576800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr18:43562400-43572400 Weak transcription NHDF-Ad bronchial
20 chr18:43562400-43583200 Weak transcription Lung lung
21 chr18:43562600-43571800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr18:43562600-43585600 Strong transcription Breast Myoepithelial Primary Cells Breast
23 chr18:43563000-43567600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr18:43563400-43592000 Weak transcription Psoas Muscle Psoas
25 chr18:43563800-43567600 Weak transcription Fetal Adrenal Gland Adrenal Gland
26 chr18:43564000-43573400 Weak transcription HSMMtube muscle
27 chr18:43564200-43567600 Enhancers Primary neutrophils fromperipheralblood blood
28 chr18:43564400-43567600 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr18:43564600-43568400 Weak transcription Primary T cells fromperipheralblood blood
30 chr18:43564600-43576000 Weak transcription Primary T killer naive cells fromperipheralblood blood
31 chr18:43564800-43574200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr18:43564800-43576400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr18:43565000-43568200 Weak transcription Aorta Aorta
34 chr18:43565000-43573600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr18:43565400-43588800 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr18:43565400-43590800 Weak transcription Colon Smooth Muscle Colon
37 chr18:43565600-43569200 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr18:43565600-43588800 Weak transcription Stomach Smooth Muscle stomach
39 chr18:43566200-43574200 Strong transcription Liver Liver
40 chr18:43566200-43576400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr18:43566200-43577200 Strong transcription Monocytes-CD14+_RO01746 blood
42 chr18:43566400-43577600 Strong transcription Primary hematopoietic stem cells short term culture blood
43 chr18:43566800-43568600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr18:43566800-43569000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr18:43566800-43572200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr18:43566800-43572200 Weak transcription Fetal Lung lung
47 chr18:43566800-43572400 Strong transcription Primary hematopoietic stem cells blood
48 chr18:43567000-43571600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr18:43567000-43572200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr18:43567200-43567600 Strong transcription Osteobl bone

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Last update: Aug 31, 2015