The 2.0 version of rSNPBase

Variant report

Variant rs59280848
Chromosome Location chr18:43561355-43561356
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:43548000-43567000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr18:43548200-43562800 Weak transcription Primary hematopoietic stem cells short term culture blood
3 chr18:43554200-43567200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr18:43554400-43566200 Weak transcription Liver Liver
5 chr18:43554600-43562600 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr18:43554600-43563000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr18:43554600-43566200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr18:43554600-43566800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr18:43554600-43567400 Weak transcription Adipose Nuclei Adipose
10 chr18:43554600-43567800 Weak transcription Primary T cells from cord blood blood
11 chr18:43554600-43567800 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr18:43554600-43568000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr18:43554600-43568800 Weak transcription Primary T helper cells PMA-I stimulated --
14 chr18:43554600-43571400 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr18:43555000-43562600 Weak transcription Primary monocytes fromperipheralblood blood
16 chr18:43557200-43567200 Weak transcription Osteobl bone
17 chr18:43557200-43573400 Weak transcription NHLF lung
18 chr18:43557400-43567200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr18:43557400-43567200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr18:43557600-43561800 Weak transcription HUVEC blood vessel
21 chr18:43557800-43567000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr18:43558400-43569600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr18:43558600-43562800 Weak transcription Monocytes-CD14+_RO01746 blood
24 chr18:43558600-43563200 Enhancers Primary neutrophils fromperipheralblood blood
25 chr18:43558800-43563000 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr18:43558800-43608000 Weak transcription Pancreas Pancrea
27 chr18:43559600-43567200 Weak transcription HMEC breast
28 chr18:43560400-43564800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr18:43560400-43566800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr18:43560400-43567800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr18:43560400-43573600 Weak transcription Fetal Intestine Large intestine
32 chr18:43560400-43582600 Weak transcription Fetal Intestine Small intestine
33 chr18:43560400-43597600 Weak transcription Left Ventricle heart
34 chr18:43560600-43567800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr18:43560600-43575600 Weak transcription Ovary ovary
36 chr18:43560600-43591600 Weak transcription Duodenum Mucosa Duodenum
37 chr18:43561000-43569600 Weak transcription K562 blood
38 chr18:43561000-43573400 Weak transcription Placenta Placenta
39 chr18:43561000-43576800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
40 chr18:43561200-43567200 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015